Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307E02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)                31   0.58 
SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)                    30   1.0  
SB_56935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.1  
SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.1  
SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)                 28   4.1  
SB_34519| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_34777| Best HMM Match : VWA (HMM E-Value=0)                         28   5.4  
SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9)                     27   7.1  
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.1  
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6)                    27   7.1  
SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_38685| Best HMM Match : fn3 (HMM E-Value=0.0025)                    27   9.4  
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)         27   9.4  
SB_80| Best HMM Match : DUF1640 (HMM E-Value=1.5)                      27   9.4  

>SB_25379| Best HMM Match : Keratin_B2 (HMM E-Value=2.5)
          Length = 442

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = +2

Query: 221 KILWKEYCKSVTLIGIATG--GLECDLELLLASIHDVMIFCIGKKELETLKNVD--QTKR 388
           K+ W    K VT  G  +    +  +++ L  ++ D+++        E ++NVD  Q   
Sbjct: 335 KLQWTPISKGVTSKGPISPDPAIMEEIDGLSNTLDDLILSLNDVDTAEPVENVDIDQADA 394

Query: 389 DLRQCYPLIDYLLESLDPNAISSPLP 466
           D +  Y  +DYLL S D + I+   P
Sbjct: 395 DCKALYSTLDYLLNSEDEDEIACEAP 420


>SB_8396| Best HMM Match : Spb1_C (HMM E-Value=0.65)
          Length = 1007

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +2

Query: 278 GLECDLELLLASIHDVMIFCIGKKELETLKNVDQTKRDLRQCYPLIDYLLESLDPNAISS 457
           GL   L+ L+ S++DV       + +E + ++DQ   D +  Y  +DYLL S D + I+ 
Sbjct: 6   GLSNTLDDLILSLNDVDT----AEPVENV-DIDQADADCKALYSTLDYLLNSEDEDEIAC 60

Query: 458 PLP 466
             P
Sbjct: 61  EAP 63


>SB_56935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1108

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 153 NDANVENCTVSLLPRFLENIGTPLSVAMAITTTDIF 46
           +DA V NC VS +  FL N GT  S+ +  T  D+F
Sbjct: 191 SDAFV-NCVVSYVADFLRNRGTSRSLGLTKTREDLF 225


>SB_21688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1078

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/66 (27%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
 Frame = +2

Query: 65   IAIATDSGVPIFSRKRG------NSDTVQFSTLASLHGINMFTKCHNLTMLNTLVDNGKI 226
            +A+A   GV I++ ++G      N++  + + + S+  +N     H+LT+L T  D+G +
Sbjct: 843  LAVADRGGVSIWNWEQGARMNYFNNNNSKLTRITSMEFLN----AHDLTLLLTGTDDGSV 898

Query: 227  -LWKEY 241
             +W++Y
Sbjct: 899  RVWRDY 904


>SB_35949| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 521

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 20  YLRKQIIK-LKMSVVVIAIATDSGVPIFS 103
           Y+RK +++ LK S  +I  ATD GVP FS
Sbjct: 357 YIRKSLLQALKGSYDLIVRATDGGVPSFS 385


>SB_25361| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 4833

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 20  YLRKQIIK-LKMSVVVIAIATDSGVPIFS 103
           Y+RK +++ LK S  +I  ATD GVP FS
Sbjct: 893 YIRKSLLQALKGSYDLIVRATDGGVPSFS 921


>SB_41319| Best HMM Match : NACHT (HMM E-Value=5.2e-14)
          Length = 961

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 230 WKEYCKS-VTLIGIATGGLECDLELLLASIHDVMIFCIGKKELETLKNVDQTKRDLRQCY 406
           WKE   + ++L G++ G ++   +  L   +  ++     K+L+  K VD+TKR++++  
Sbjct: 311 WKEISDALISLGGVSQGDIDVLKDTPLERDYVTLLKEWFDKDLDLSKEVDETKREVQETK 370

Query: 407 PLID 418
             +D
Sbjct: 371 TKVD 374


>SB_34519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 243 QYSFHNILPLSTSVFNIVKLWHLVNMLIPCNDANVENCTVSLLPRFL 103
           QY+F  I PL  +     K  HL  +++   D +V  C V+LL  +L
Sbjct: 89  QYTFRVITPLKYTTRYGGKSRHLAPIVLKQYDTDVRLCVVTLLNAYL 135


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 50  MSVVVIAIATDSGVPIFSRKRGN 118
           M+  ++ + TD G+P+F+R +G+
Sbjct: 685 MAAYLLCLTTDGGIPLFTRTKGD 707


>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1268

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +2

Query: 323  VMIFCIG------KKELETLKNVDQTKRDLRQCYPLIDYLLESLDPNAISS 457
            V IFC+G      +KELET+ +  Q+   +   Y +++  LE +     SS
Sbjct: 1005 VEIFCVGVGDNVVRKELETIASSPQSDHVIMTSYNMLEATLEQIKQKVCSS 1055


>SB_49730| Best HMM Match : DUF59 (HMM E-Value=8.9)
          Length = 631

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 135 NCTVSLLPRFLENIGTPLSVAMAIT 61
           NC VS +  FL N GTP S+ +  T
Sbjct: 236 NCVVSYVADFLRNRGTPRSLGLTKT 260


>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1562

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 135 NCTVSLLPRFLENIGTPLSVAMAIT 61
           NC VS +  FL N GTP S+ +  T
Sbjct: 58  NCVVSYVTDFLRNRGTPRSLGLTKT 82


>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1039

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 135  NCTVSLLPRFLENIGTPLSVAMAIT 61
            NC VS +  FL N GTP S+ +  T
Sbjct: 930  NCVVSYVADFLRNRGTPRSLGLTKT 954


>SB_24250| Best HMM Match : ResIII (HMM E-Value=3.6)
          Length = 842

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 135 NCTVSLLPRFLENIGTPLSVAMAIT 61
           NC VS +  FL N GTP S+ +  T
Sbjct: 253 NCVVSYVADFLRNRGTPRSLGLTKT 277


>SB_15458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = -3

Query: 336 QNIMTSCIDAKRSSKSHSKPPVAMPISVTLLQYSFHNILPLSTSVFNIVKLWHLVNMLIP 157
           +++ T   DAK + K +     A+  S  L+Q     I+ L  +    V     V+  I 
Sbjct: 454 RHVETMDCDAKEARKEYESVTQALESSRNLVQLMTEKIVDLEKASSRPVDAADAVDSWIK 513

Query: 156 CNDANV 139
           C D NV
Sbjct: 514 CQDTNV 519


>SB_38685| Best HMM Match : fn3 (HMM E-Value=0.0025)
          Length = 101

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +2

Query: 221 KILWKEYCKSVTLIGIATGGLECDLELLLASIHDVMIFCIGKKELETL 364
           KI+W+    ++T  G+   G  C L+  +  +    ++C+  +   TL
Sbjct: 39  KIMWRHMMTNMT--GVMVTGANCPLQANITKLQKFSVYCVRVQIANTL 84


>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
          Length = 445

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 183 WHLVNMLIPCNDANVENCTVSLL-PRFLENIGTPLSVAMAI 64
           ++LVN+++PC+   V    + +L P   E IG  ++V MA+
Sbjct: 188 YYLVNLVVPCSLIGVMVLLIFVLPPESGERIGLGITVLMAM 228


>SB_80| Best HMM Match : DUF1640 (HMM E-Value=1.5)
          Length = 227

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 206 LVDNGKILWKEYCKSVTLIGIA 271
           L+D  K ++K+YC +VT IG+A
Sbjct: 171 LIDCIKAIFKKYCFTVTAIGLA 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,888,606
Number of Sequences: 59808
Number of extensions: 293118
Number of successful extensions: 741
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)