Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)              270   3e-73
SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.33 
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               30   1.0  
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)               29   2.3  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   5.4  
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)                        27   7.1  
SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_4003| Best HMM Match : Ribosomal_L5_C (HMM E-Value=0)
          Length = 260

 Score =  270 bits (663), Expect = 3e-73
 Identities = 126/148 (85%), Positives = 137/148 (92%)
 Frame = +3

Query: 78  NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 257
           N M+ L IRKL LNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKI+
Sbjct: 2   NPMKELRIRKLVLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIS 61

Query: 258 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 437
           VHCTVRG KAEEILE+GLKV+EYEL +  FSATGNFGFGIQEHIDLGIKYDPSIGIYG+D
Sbjct: 62  VHCTVRGPKAEEILEKGLKVKEYELVKGCFSATGNFGFGIQEHIDLGIKYDPSIGIYGMD 121

Query: 438 FYVVLGRPGFNVAHRRRKTGKVGFPHRL 521
           F+VVLGRPGFN++ R+ K G+VGFPHRL
Sbjct: 122 FFVVLGRPGFNISKRKHKQGRVGFPHRL 149


>SB_17981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1303

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 168 TPWRHESACHRIHQHRCSSKAF*YEDSALHF*NYPSEPSSPFYLSST 28
           T  R +S   R  + RCS+K+  +   A HF N+   P  PFY S T
Sbjct: 565 TSRRFQSRPQRCPRRRCSNKSLSFVGRA-HFSNFRVTPKMPFYRSMT 610


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 139 VTG*LVPPRCWSNSQDNSLYFP 204
           VT  LVPP  W+ SQD  +Y+P
Sbjct: 742 VTPPLVPPMPWTGSQDAGMYYP 763


>SB_10020| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 379

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = -2

Query: 373 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 218
           P P++P +  L S + S S  +KP+SRI ++L+  ++Q   ++  + +P+  T
Sbjct: 149 PLPRIPTSPSLVSLQVSPSYPYKPVSRIPTSLSLVSLQAPPLYPYKPLPRIST 201



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 373 PKPKLPVAEKL-SRRNSYSLTFKPLSRISSALAPRTVQWTAIFSLRRIPKDRT 218
           P P++P +  L S     S  +KPLSRI ++ +  ++Q +A +  + +P+  T
Sbjct: 299 PLPRIPTSPSLVSLLARPSYLYKPLSRIPTSPSLVSLQASASYPYKTLPRIST 351


>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
          Length = 403

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
 Frame = -2

Query: 373 PKPKLPVAEKLSRRNSYSL-TFKPLSRISSALAPRTVQWTAIF---SLRRIPKDRTVYLA 206
           P P++P +  L    +  L T+KPL RIS++L+  ++Q +  +    L RIP D ++ ++
Sbjct: 303 PLPRIPTSLSLVSLQAPPLYTYKPLPRISTSLSLVSLQASPSYPYKPLPRIPSDLSL-VS 361

Query: 205 LENTGCCPVSCSNTLAARVSLSP 137
           L+     P S    L  R+  SP
Sbjct: 362 LQ----APPSYPYKLLPRIPTSP 380


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 333 RRDNFSATGNFGFGIQEHIDLGIKYD 410
           ++ ++SATG+F   ++EHI  G + D
Sbjct: 306 KKSHYSATGSFDGSVEEHISEGAQED 331


>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 964

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 316 TFKPLSRISSALAPRTVQWTAIFSLRRIPKDR 221
           T KP S +     P+  +WTA   L   PK+R
Sbjct: 389 TLKPRSILPDGRTPKNPEWTACVKLGMNPKER 420


>SB_1562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 237 RRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNF 365
           RR +        RGA A EI ++G+K +  E RR+     G +
Sbjct: 147 RREDTFPKEKEARGANANEISKQGVKEKARETRREIVRQEGKY 189


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 138 GDRLTRAAKVLEQLTGQQPVFSKARY 215
           G R TR A   +QLT  + VFSK  Y
Sbjct: 66  GSRRTRTAFTHQQLTALEKVFSKTHY 91


>SB_45994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 199 FPRLGIQCGLLVSVVMKRLLSIVQSEELKQKK 294
           F  L +  GL+ +++ KRLLSI  S + ++ K
Sbjct: 196 FSALSLVSGLMAAIIAKRLLSIKTSRDSEKHK 227


>SB_7224| Best HMM Match : TIL (HMM E-Value=8.2)
          Length = 147

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/69 (26%), Positives = 25/69 (36%)
 Frame = -2

Query: 487 RLLCATLKPGRXXXXXXXXXXXXIEGSYLIPKSMCS*IPKPKLPVAEKLSRRNSYSLTFK 308
           R  C T+KP                    IP   C    K K P+++ L     YS+ F+
Sbjct: 77  RCYCLTVKPCGSKISADPRICPENVADRRIPPLECDIQAKIKTPISKTLLHVRLYSIVFR 136

Query: 307 PLSRISSAL 281
           P     S+L
Sbjct: 137 PTKTQKSSL 145


>SB_58040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 99  IRKLCLNICVGESGDRLTRAAKVLEQLTGQQPV 197
           IR++CL I   E G    + AK  +Q++  QP+
Sbjct: 6   IRRICLEIEEKEKGQETQKQAKKEDQVSEPQPI 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,673,729
Number of Sequences: 59808
Number of extensions: 349196
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)