Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619     31   0.74 
03_05_0774 - 27615899-27617134                                         28   4.0  
06_01_0323 + 2339916-2340065,2340535-2340732,2341158-2341307,234...    28   5.2  
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242...    27   6.9  
07_03_0476 - 18547223-18548187,18548743-18549958                       27   9.1  

>06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619
          Length = 126

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 131 FAFGLRAMEKQIVCNGAQVEEW 196
           + FG+ AM K+ VC+GA  E W
Sbjct: 27  WVFGMAAMRKEAVCSGASRERW 48


>03_05_0774 - 27615899-27617134
          Length = 411

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 151 RPKPKGKLFAGTKSPLLMAFSRSAGVFHS*STSFQANRSCGVAASHDATT 2
           +PK KGK+ AGTK P   A + +A       T  +  +S G  AS D  T
Sbjct: 224 KPKEKGKVAAGTKQPTAPAETATAS--SPGGTPEEKRKSKGKKASGDQGT 271


>06_01_0323 +
           2339916-2340065,2340535-2340732,2341158-2341307,
           2341596-2341649
          Length = 183

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 177 VPKWKNGVAS---SLNYVDLNGTSDQLLKPYPS 266
           VP WK  V     S+NY+ +  T D+  +PYPS
Sbjct: 68  VPNWKVDVQPREFSMNYIMVGYTLDKDYRPYPS 100


>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
            14324349-14324654,14324841-14325055,14325551-14325845,
            14325965-14326129,14326324-14327352,14333553-14333814,
            14334135-14334631,14338714-14340123
          Length = 1527

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 240  DQLLKPYPSLKDNFIPDSAKDLPSNKTIISV-FRI-YIDPCDRLWVMDTGLA-DIWGAGN 410
            D+      S  D  I    ++  S  TIIS+  RI  +  CDR+ V+D GLA +     N
Sbjct: 1446 DEATASVDSRTDAVIQKIIREEFSACTIISIAHRIPTVMDCDRVLVIDAGLAKEFDSPAN 1505

Query: 411  QIVRPSI 431
             I RPS+
Sbjct: 1506 LIERPSL 1512


>07_03_0476 - 18547223-18548187,18548743-18549958
          Length = 726

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +3

Query: 138 LGLGRWKNKLFVTVPKWKNGVASSLNYVDLNGTSDQLLKPYPSLKDNFIPDSAKDLPSNK 317
           +G   W NKLF+   KW      +L   D+  T    L+     KDN I D  ++L   +
Sbjct: 416 VGENEWLNKLFLEKEKWALPYWRALFSADILTT----LR-----KDNMINDIKRELSEQE 466

Query: 318 TIISVFRIY 344
            I+   R Y
Sbjct: 467 DILQFLRRY 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,019
Number of Sequences: 37544
Number of extensions: 295575
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)