Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)                 29   1.8  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)                  27   9.4  

>SB_1576| Best HMM Match : bZIP_1 (HMM E-Value=1.1e-11)
          Length = 382

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 213 NYVDLNGTSDQLLKPYPSLKDNFIPDSAKDLPSNKTIISVFRIYIDPCDRLWVMDTGLAD 392
           N  D N     L  P  + ++NF P ++++L SN   +  F+I     ++    +TGL  
Sbjct: 68  NKYDKNSMRLNLRPPGMTGQENFRPSASRNLFSNSPDLGTFKIVTPDLEKFIGNNTGLTP 127

Query: 393 IWGAGNQIVRPS 428
               GN I  PS
Sbjct: 128 ---KGNPIQLPS 136


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 405  GNQIVRPSIVIFDLKTDQLLHRYFFKLEDMKEDS 506
            GN ++R + ++FDL+ D L  R F +L D  +DS
Sbjct: 1547 GN-VIRLTFIMFDLEDDPLCARDFLELMDGGQDS 1579


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 261 DTALEVDLRYHSNQHNSTKKRHHSSTWAPLQTICF 157
           D  ++ D RY  +QH+ T +R  +  W P QT  F
Sbjct: 439 DKVIQYDARYRGHQHSYTIRR--AIPWPPRQTQSF 471


>SB_15862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 289

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 189 KNGVASSLNYVDLNGTSDQLLKPYPSLKDNFIPDSAKD 302
           K+G  S   Y  L+GT +       SLKD+F  D  KD
Sbjct: 213 KDGKISFAEYAGLDGTGEDNQDSLKSLKDDFNNDLDKD 250


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 261 DTALEVDLRYHSNQHNSTKKRHHSSTWAPLQTICF 157
           D  ++ D RY  +QH+ T +R  +  W P QT  F
Sbjct: 224 DKVIQYDARYRGHQHSYTIRR--AIPWPPRQTQSF 256


>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
          Length = 822

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 237 RYHSNQHNSTKKRHHSSTWAPLQTICFSIALSP-KANYSLVQSHH 106
           + H     S K R   +TW P +    SIA +  + +  L+QSHH
Sbjct: 517 KLHLKGFFSAKLRGGQATWLPCEVEALSIAAATNQFSPFLIQSHH 561


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,385,263
Number of Sequences: 59808
Number of extensions: 356838
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)