Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.2  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   3.9  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    26   3.9  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   6.8  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   6.8  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   9.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.0  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.0  

>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 464 YKSFRRNTNIV*REHTKTERTFFGNNNNIALANPYK 357
           YK++RR T+    ++ K+ R    N+++I L+NP K
Sbjct: 41  YKTYRRITDCPEIKNKKSRRKNQRNSSSIGLSNPNK 76


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 416 KTERTFFGNNNNIALANPY-KGC 351
           +T R FF NN  + L +PY +GC
Sbjct: 586 RTYRVFFLNNGTLPLNHPYVRGC 608


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 477 NTDTVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASE 367
           +T TV++ +     SIK    N  NF  E+ ++ ASE
Sbjct: 8   STSTVKDNEHSLDLSIKSIPSNEKNFSTEKSENEASE 44


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 52  RRTCQDLTPGRRYHCSEEAAGQQAHRDQ 135
           R+    L+ G RY+  +EA+ +Q+ RD+
Sbjct: 203 RKNVVKLSDGERYNSLQEASRKQSERDR 230


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 393 PKKSSFCFCMFSLYYISISPETLVRY 470
           PK+ ++ F    + Y+S +P+T V Y
Sbjct: 248 PKEGTYTFSNMHIRYVSANPKTPVMY 273


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 17/46 (36%)
 Frame = +1

Query: 25  YHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSGRPSSP 162
           Y  L S+    T   +T      C E       H+DQ  +  P SP
Sbjct: 510 YTELSSKNHDDTSDSITVDEAVICLERLVDLVCHQDQQATQTPQSP 555


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 364  GFASAMLLLFPKKVRSVFVCSLYTILVFLLKLLYGIRI 477
            G ++  ++LF   + S  +C+L T+L F  K  Y +R+
Sbjct: 1053 GSSTVSIILFSLFLVSPLICALATMLAF-QKFFYQVRL 1089


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 72  HSWSPVSLL*RSCWPASTPR 131
           H+WS +  L RS WP S  R
Sbjct: 643 HNWSSIGRLRRSEWPRSFNR 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,729
Number of Sequences: 5004
Number of extensions: 36962
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)