Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0259 - 42353992-42354111,42354255-42354385,42355484-423555...    30   0.98 
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749...    28   4.0  
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579     28   5.2  
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873...    27   6.9  

>01_07_0259 -
           42353992-42354111,42354255-42354385,42355484-42355571,
           42356439-42357282,42357354-42357934,42358962-42359159
          Length = 653

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 468 TVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEPLQRVYNK 343
           T +E  +KY    +R  KN + F+ + + HRA E L+ VY K
Sbjct: 608 TWEEIVQKYDTMFERNAKNGS-FYLQSKVHRAKECLEAVYQK 648


>02_05_1052 +
           33770355-33773981,33774217-33774336,33774880-33774996,
           33775322-33775411,33775971-33776078,33776304-33776351
          Length = 1369

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 79  GRRYHCSEEAAGQQAHRDQLRSGRPSSP 162
           GR    + EAAG QA R Q    RP++P
Sbjct: 59  GRSSAAAAEAAGSQARRSQSTERRPATP 86


>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
          Length = 458

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 79  GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 168
           GRR     E  G+ A  D  R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440


>10_08_0391 +
           17486109-17486210,17487032-17487129,17487331-17487361,
           17487655-17487707,17489254-17489402,17489828-17489898,
           17489988-17490131,17490249-17490309,17492180-17492265,
           17492839-17492926,17494012-17494142,17494266-17494394
          Length = 380

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 468 TVQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEPLQRVYNK 343
           T +E  ++Y    +R  K+ + F+ + + HRA E L+ VY K
Sbjct: 332 TWEEIAQRYDNLFERNAKSGS-FYLQSKVHRAKECLENVYQK 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,623,563
Number of Sequences: 37544
Number of extensions: 253101
Number of successful extensions: 710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)