Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0) 31 0.76
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 29 3.1
SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_30926| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.6
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045) 27 7.1
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 27 7.1
SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75) 27 9.4
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88) 27 9.4
SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017) 27 9.4
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7) 27 9.4
SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0) 27 9.4
SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_59451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 58 TCQDLTPGRRYHCSEEAAGQQAHRDQLRSGRPSSPRGA 171
T +D+ G H SE G RD++ SG+ S RG+
Sbjct: 186 TAEDIFVGSGNHASERTDGSSTKRDEIPSGKDHSGRGS 223
>SB_33333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 22 GYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSGR 150
GY ++ R R C L PGR Y + GQ R + +GR
Sbjct: 515 GYVWIKKRDFRCRCPKLKPGRSYFIAGNLRGQSRKRSIVLNGR 557
>SB_28024| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 968
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFWEQQQHRASEP 364
++E +E + S++R YKN T FW +AS P
Sbjct: 450 LRESRENFFQSLERDYKNNTKRFWGLDASKASGP 483
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 233 CRPCFGRHR*TCPSRGRCLRSA 168
CR C R + TCP G CL+S+
Sbjct: 458 CRTCNCRQKNTCPLDGNCLQSS 479
>SB_20163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 400
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 48 KPSYLPRSHSWSPVS 92
K ++LPRSH+W+P+S
Sbjct: 105 KETWLPRSHTWTPLS 119
>SB_30926| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 25.4 bits (53), Expect(2) = 6.6
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 57 YLPRSHSWSPVS-LL*RSCWPAS 122
Y P++H W+PV+ +L WP++
Sbjct: 74 YNPQTHQWTPVAPMLTPRAWPSA 96
Score = 20.6 bits (41), Expect(2) = 6.6
Identities = 5/11 (45%), Positives = 9/11 (81%)
Frame = +3
Query: 210 MTPKTWPTAPI 242
+TP+ WP+A +
Sbjct: 88 LTPRAWPSAAV 98
>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
Length = 2506
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +1
Query: 64 QDLTPGRRYHCSEEAAGQQAHRDQLRSG--RPSSPR 165
+D P RR S + G+QA RD L +PSSP+
Sbjct: 2149 EDRRPSRRPSHSSQTFGEQARRDTLTITPIKPSSPK 2184
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +1
Query: 1 RPHPPILGYHRLRSRQSRRTCQDLTPGRRYH---CSEEAAGQQAHRDQLRSGRPSSPRGA 171
RP ILG L+ S + +LT R+ H CS +A R R+ P+ P
Sbjct: 1158 RPDLNILG--ELKPEGSWQCGTELTEWRKRHFVSCSSRWPRGRASRRDARACAPTMPSAR 1215
Query: 172 LRKQRPR 192
LR +PR
Sbjct: 1216 LRHTQPR 1222
>SB_21205| Best HMM Match : Ribosomal_L30_N (HMM E-Value=0.75)
Length = 505
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 306 LRESRENFFQSLERDYKNNTKRFW 329
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 31 RLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSGRP 153
R RSR RR + +P RR + ++HR + RS P
Sbjct: 225 RSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSP 265
>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
Length = 697
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 158 LRESRENFFQSLERDYKNNTKRFW 181
>SB_50618| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00017)
Length = 748
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 514 LRESRENFFQSLERDYKNNTKRFW 537
>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1480
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 1275 LRESRENFFQSLERDYKNNTKRFW 1298
>SB_45324| Best HMM Match : MbeB_N (HMM E-Value=1.7)
Length = 235
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 197 LRESRENFFQSLERDYKNNTKRFW 220
>SB_35523| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1410
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 313 LRESRENFFQSLERDYKNNTKRFW 336
>SB_20293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1821
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 465 VQEFQEKY*YSIKRTYKNRTNFFW 394
++E +E + S++R YKN T FW
Sbjct: 261 LRESRENFFQSLERDYKNNTKRFW 284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,709,588
Number of Sequences: 59808
Number of extensions: 291680
Number of successful extensions: 1010
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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