Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.2  
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc...    25   5.2  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   6.8  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    25   9.0  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 178  NGLLDGRTLRSTAHARVSVSNTSG 107
            NGL   RTL +  H+R+SV N +G
Sbjct: 1002 NGLATIRTLDNYLHSRISVRNETG 1025


>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 378 NFSVGCGLEGQPLS*FVEQGSY 443
           N+ VGCGL G+  + F +QG +
Sbjct: 177 NYIVGCGLYGKNTTSFKDQGVF 198


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 439 EPCSTN*DSGWPSSPHPTLKFQ*NDL 362
           EP S++  S  P S +PTL FQ ND+
Sbjct: 183 EPSSSSSFSVPPESLNPTLSFQHNDV 208


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -2

Query: 196 DKCLHRNGLLDGRTLRSTAHARVSVSNTSGPSPVNS 89
           D+   ++ +L G+T   T+ A  S++NT   +PV+S
Sbjct: 178 DQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSS 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,265
Number of Sequences: 5004
Number of extensions: 41884
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)