Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0006 + 41336-41494,41587-41868                                   27   6.9  
11_01_0007 + 42923-43081,43174-43455                                   27   6.9  

>12_01_0006 + 41336-41494,41587-41868
          Length = 146

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 AESFHLTNHYDEDIYPVYSTYKQVTLYIPTGH 246
           A   HL +  D+D+   Y     + LY P GH
Sbjct: 115 AAGLHLCDTADDDLLAAYLGVSSIDLYSPRGH 146


>11_01_0007 + 42923-43081,43174-43455
          Length = 146

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 151 AESFHLTNHYDEDIYPVYSTYKQVTLYIPTGH 246
           A   HL +  D+D+   Y     + LY P GH
Sbjct: 115 AAGLHLCDTADDDLLAAYLGVSSIDLYSPRGH 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,699,257
Number of Sequences: 37544
Number of extensions: 241757
Number of successful extensions: 409
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)