Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D08f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   4.1  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               28   5.4  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               27   7.1  
SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)                    27   9.4  

>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1449

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 202  KQDKCLHRNGLLDGRTLRSTAHARVSVS--NTSGPSPVNSPIR 80
            K DK  H N  L  + + S A A    +  + SGP PV+SP++
Sbjct: 1326 KADKDKHENNELGQKPVSSPAKAEKDNTEFSESGPEPVSSPLK 1368


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 160 RTLRSTAHARVSVSNTSGPSPVNSPI 83
           RT  +T H + S +    P PVNSP+
Sbjct: 635 RTSPATGHGKSSPAKKRSPKPVNSPV 660


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 442 YEPCSTN*DSGWPSSPHPTLKFQ*NDLHCLRV 347
           Y  C  +  S WPS   P  ++  NDL  L++
Sbjct: 49  YNTCPEDRQSLWPSDLKPIFRYMKNDLDSLKI 80


>SB_292| Best HMM Match : HEAT (HMM E-Value=4.6e-29)
          Length = 1239

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 252 YNVTCWYVQCDLFVCTINRINVF 184
           +N   W V+ ++ VC +N IN+F
Sbjct: 92  FNHKAWRVREEVLVCIVNAINIF 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,361,224
Number of Sequences: 59808
Number of extensions: 308924
Number of successful extensions: 486
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)