Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D08f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.47 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.47 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 160 RTLRSTAHARVSVSNTSGPSPVNSPI 83
           +T     H +  ++NTSGP  V++P+
Sbjct: 168 KTKNECDHVQFLITNTSGPGVVSNPM 193


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 160 RTLRSTAHARVSVSNTSGPSPVNSPI 83
           +T     H +  ++NTSGP  V++P+
Sbjct: 168 KTKNECDHVQFLITNTSGPGVVSNPM 193


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 172 NHYDEDIYPVYSTYKQ 219
           NH DE I PV+ST ++
Sbjct: 113 NHEDETIRPVFSTLQR 128


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 14  SNIPFFFLPMLIALRGYFSFALTYR 88
           S I FF +PMLI L  Y    L  R
Sbjct: 216 STIIFFLIPMLIILVVYTRMGLKIR 240


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 196 DKCLHRNGLLDGRTLRSTAHARVSVSNTSGPSPVNS 89
           +K L  NG+  G       + +V+VS  + P P+ S
Sbjct: 162 EKSLFENGVEIGINFDKYDNIQVNVSGDNVPQPIES 197


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 166 DGRTLRSTAHARVSVSNTSGPSPVN 92
           +G + + + H  VS ++T+G  P N
Sbjct: 708 EGDSFKVSKHEEVSRTSTAGQFPTN 732


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 148  STAHARVSVSNTSGPSPVNSPIR*GEAEIAPQG 50
            +T H R+   N  G S  +  +    AE AP G
Sbjct: 946  TTYHLRIVAENEIGASDPSDTVTIITAEEAPSG 978


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,195
Number of Sequences: 438
Number of extensions: 2616
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)