Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D07f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CA448 Cluster: hypothetical protein TTHERM_0049...    32   9.2  
UniRef50_A6D808 Cluster: Putative uncharacterized protein; n=1; ...    32   9.2  

>UniRef50_UPI00006CA448 Cluster: hypothetical protein
           TTHERM_00497080; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00497080 - Tetrahymena
           thermophila SB210
          Length = 1797

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -3

Query: 492 NSVFESTIIKAGNVTFGQLLVNQKNELLTLYSIGSHKTVLNDILDK*QVKY*PLFN 325
           N +F +T      V    LL+N +NE + L+ IGS+K + N IL     +Y  L N
Sbjct: 147 NLIFLTTTYSGIYVFEQMLLLNNQNEQVFLFEIGSYKQMQNTILMTSDGQYLVLLN 202


>UniRef50_A6D808 Cluster: Putative uncharacterized protein; n=1;
           Vibrio shilonii AK1|Rep: Putative uncharacterized
           protein - Vibrio shilonii AK1
          Length = 394

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 160 SHAKLTRLRVER*MSRLLSKVAGNLCIWTKK 252
           SHA LT   V +  SR+ S+++G   +W+KK
Sbjct: 28  SHANLTPEEVRQTRSRVFSEISGTYAVWSKK 58


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 477,502,699
Number of Sequences: 1657284
Number of extensions: 8866867
Number of successful extensions: 15483
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15478
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)