Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D07f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   3.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   5.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 7   NHFEQTRSRHRAQNWKFNS 63
           +H     SRH  ++W FN+
Sbjct: 151 HHLGSVYSRHPYESWPFNT 169


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 YTDCLPPLIIDDSFTVPLLSALVSHE 161
           + D +PP +  +S  V  L+  +SH+
Sbjct: 437 FHDTIPPYLFFESPPVVFLNDFISHQ 462


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 YTDCLPPLIIDDSFTVPLLSALVSHE 161
           + D +PP +  +S  V  L+  +SH+
Sbjct: 437 FHDTIPPYLFFESPPVVFLNDFISHQ 462


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 YTDCLPPLIIDDSFTVPLLSALVSHE 161
           + D +PP +  +S  V  L+  +SH+
Sbjct: 437 FHDTIPPYLFFESPPVVFLNDFISHQ 462


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 YTDCLPPLIIDDSFTVPLLSALVSHE 161
           + D +PP +  +S  V  L+  +SH+
Sbjct: 437 FHDTIPPYLFFESPPVVFLNDFISHQ 462


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 89  IVKLHILVLLLNFQFCARWRLLVCSKWFF 3
           I  +H+L LL  + F      L+C  +F+
Sbjct: 122 IFTVHLLFLLCIYYFVVPLFFLLCIYYFY 150



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 89  IVKLHILVLLLNFQFCARWRLLVCSKWF 6
           I  +H+L LL  + F     +L+C  +F
Sbjct: 274 IFTMHLLFLLCIYYFYCALIILLCIYYF 301


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,787
Number of Sequences: 336
Number of extensions: 2582
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)