Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    26   3.9  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   5.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   5.2  

>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/72 (22%), Positives = 31/72 (43%)
 Frame = +1

Query: 28  SRHRAQNWKFNSNTRMCSFTIR*FTSLLPMTYMPLHIKKHDGVTSHAKLTRLRVER*MSR 207
           S+   Q +K NS  +     +    S+L  T+ P+ +  H    +  K+   ++++    
Sbjct: 517 SQELLQEYKHNSALQSAKPALDLNVSILASTFWPIDLSPHKIKCNFPKVLLAQIDQFTDF 576

Query: 208 LLSKVAGNLCIW 243
            LSK  G   +W
Sbjct: 577 YLSKHTGRKLLW 588


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 291 SSPSKNNVQNLH 326
           S+PSKNN+Q+LH
Sbjct: 65  SNPSKNNIQHLH 76


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 204 SSIIKGGRQSVYLDKKMLLICQYRL 278
           +S +K G     +D+K LL C+YR+
Sbjct: 9   TSALKDGAPKATVDQKQLLPCKYRV 33


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 498 KINSVFESTIIKAGNVTFGQLLVN--QKNELLTLYSIGSHKT 379
           K+ SV +    +A NVTF  +LVN    +  L+  S+ +H T
Sbjct: 373 KVCSVTKKLASQAANVTFAAILVNCGVLSRNLSFISLAAHDT 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,367
Number of Sequences: 5004
Number of extensions: 40524
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)