Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 96   IYVTPTYDIYAAAHKKT*RRHISCETNALKSGTVNESSIIKGGRQSVYLD 245
            ++VTP        H KT    +  + NALK+   N+  ++      +YLD
Sbjct: 1003 VHVTPELIYEYQIHPKTLNEVLQADMNALKN--FNQPLLVNDQLGQLYLD 1050


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 495 INSVFESTIIKAGNVTFGQ 439
           INS F STI+ +  VTF Q
Sbjct: 293 INSGFYSTIMYSNGVTFPQ 311


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 495 INSVFESTIIKAGNVTFGQ 439
           INS F STI+ +  VTF Q
Sbjct: 293 INSGFYSTIMYSNGVTFPQ 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,623
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)