Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D06f
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 127 2e-30
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 62 9e-11
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 29 1.0
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2) 25 1.7
SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.8
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.4
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 4.2
SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 27 4.2
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 5.5
SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066) 27 5.5
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 5.5
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 5.5
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 27 5.5
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002) 27 5.5
SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6) 27 5.5
SB_868| Best HMM Match : SCRL (HMM E-Value=4.5) 27 5.5
SB_48040| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 26 7.3
SB_1253| Best HMM Match : TraD (HMM E-Value=1.5) 26 7.3
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_37967| Best HMM Match : DUF1279 (HMM E-Value=0.28) 26 7.3
SB_19210| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_50443| Best HMM Match : NinG (HMM E-Value=5.6) 26 9.7
SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_9259| Best HMM Match : bZIP_1 (HMM E-Value=3.5) 26 9.7
SB_7514| Best HMM Match : OATP (HMM E-Value=0) 26 9.7
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 26 9.7
SB_52514| Best HMM Match : DUF1086 (HMM E-Value=1.3) 26 9.7
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 26 9.7
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 127 bits (307), Expect = 2e-30
Identities = 61/106 (57%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 178
+VNVPKQR+T+ +QYK K AQG+RRYDRKQ G+GGQ+KP+F
Sbjct: 8 VVNVPKQRKTFCKGKKCRRHTLHKVTQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVFHK 67
Query: 179 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLR+EC CK R Q+ LKRCKHFELGGDKKRKGQMIQF
Sbjct: 68 KAKTTKKIVLRMECTQCKYRKQMPLKRCKHFELGGDKKRKGQMIQF 113
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 62.5 bits (145), Expect = 9e-11
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +2
Query: 200 IVLRLECADCKVRSQVALKRCKHFELGGDKKRK 298
IVLR+EC CK R Q+ LKRCKHFELGGDKKRK
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 29.1 bits (62), Expect = 1.0
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 72 YHSTKSPRK-GTLPRVED--GMIVNSRVTVVSPNPSSKRRQK 188
Y + P+K G RV++ G++ R T+ PN S RRQ+
Sbjct: 1011 YEAAWDPKKSGNTERVQELQGVVTTDRQTIDDPNTSESRRQE 1052
>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
Length = 474
Score = 24.6 bits (51), Expect(2) = 1.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 236 RSQVALKRCKHFELGGD 286
+S++A RC H LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435
Score = 22.2 bits (45), Expect(2) = 1.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 89 SKERHAAQGRRRYDRKQQGYGGQSKPIF 172
++ RH + RRRY + G QS+ F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424
>SB_12592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 28.3 bits (60), Expect = 1.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 12 TYQNSAGRTAKNVNATKYTRYHSTKSPR----KGTLPRVED--GMIVNSRVTVVSPNPSS 173
T +S G + T +T K+ R G RV++ G++ R T+ PN S
Sbjct: 43 TSTSSRGARTQTTAETSFTTEGRCKAKRLQAVDGVTERVQELQGVVATDRETIDDPNTSE 102
Query: 174 KRRQK 188
RRQ+
Sbjct: 103 SRRQE 107
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 212 LECADCKVRSQVALKRCKHFELG 280
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_28160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 672
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 39 AKNVNATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPLRKL 203
A V+AT+ S +KG L +E G+I + + P+P + Q PL +L
Sbjct: 147 ANRVDATRTPPPISEDDAKKGILSLIERGLIPPAAELTLEPSP-VRHHQAPLHEL 200
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +3
Query: 51 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPLRKLC 206
N++KY + S SP +P ++ ++NS ++V+ S ++KP+ + C
Sbjct: 537 NSSKYNQIQSNISP--ADVPSLKVNFMINSIISVLPLLTSEDSKKKPVCESC 586
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 329 LEAFKIGSSVPFSSCHHRAQSACI 258
+E + +G S+ + C H SACI
Sbjct: 261 MEEYAVGDSMKYLPCRHNFHSACI 284
>SB_25632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 303
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQKPLRKL-CSVLSV 221
G++ R T+ PN S RRQ+ L+ L C S+
Sbjct: 164 GVVAADRETIDDPNTSESRRQEALQSLSCECTSM 197
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +3
Query: 78 STKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVP 224
+ K P K T+P ED ++ +V + S ++ PLR + S SVP
Sbjct: 191 NNKDPVK-TIPNKEDNASLSRTRSVYDNDSLSSDKKDPLRPMISYRSVP 238
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 60 KYTRYHS-TKSPRKGTLPRVEDGMI--VNSRVTVVSPNPSSKRRQ 185
K TRY S T S R P ++ + +NS SP+PS+KR +
Sbjct: 2061 KSTRYSSRTSSNRDSRTPPADEKIRADINSNEVQSSPSPSTKREE 2105
>SB_55929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 931
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = -2
Query: 111 WAACLSLDFLYCDTLCTLWHLHFLQYVLRCFG 16
W L F+ C TLC W + Y R G
Sbjct: 283 WIGAWWLGFVICGTLCIFWSIWLFGYPKRIPG 314
>SB_52318| Best HMM Match : Pox_A32 (HMM E-Value=0.066)
Length = 716
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 146 NPAVYDHTVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 24
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 167 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTPA 206
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 86 KSKERHAAQGRRRYDRKQQGY 148
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 236 RSQVALKRCKHFELGGDKKR 295
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 309 IICPFLFLSPPSSKCLHLFNATCDLTLQSAHSR 211
I+C F +P +KCLH F C L +S+
Sbjct: 246 IMCRKTFKNPVVTKCLHYFCEACALQHYKKNSK 278
>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1359
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 146 NPAVYDHTVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCA 24
+P + DH VFYP P TF + + I ++ ST+ A
Sbjct: 1172 HPILNDHGVFYPKALPHPLTF-EITLATVSDIVVYSSTTPA 1211
>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
Length = 1725
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 146 NPAVYDHTVFYPGQRAFPWTF-CTVIPCVLCGIYIFCSTSCA 24
+P + DH VFYP P TF T+ P + I ++ ST+ A
Sbjct: 1243 HPILNDHGVFYPKALPHPLTFEITLAP--VSDIVVYSSTTQA 1282
>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
Length = 399
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -3
Query: 122 VFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 15
VFYP P V+ C+ + + C C +LV
Sbjct: 105 VFYPPSNGLPVFTLLVMDCLCFTLLVMCYLCCTLLV 140
>SB_868| Best HMM Match : SCRL (HMM E-Value=4.5)
Length = 391
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 144 PCCLRSYRLLPWAACLSLDFLYCDTLCTLWHLHFLQYV 31
PCC Y L CL LY + +W +H+ +Y+
Sbjct: 195 PCCATLYHLYSDDVCLCEWVLYSTHILKVW-MHYNEYL 231
>SB_48040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 302
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 96 KGTLPRVED--GMIVNSRVTVVSPNPSSKRRQK 188
+G RV++ G++ R T+ PN S RRQ+
Sbjct: 57 QGNTERVQELQGVVATDRETIDDPNTSESRRQE 89
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 90 PRKGTLPRVEDGMIVNSRVTVVSPNPSSKR 179
P+K LP E+G +V S + +PN + R
Sbjct: 452 PKKDMLPNKENGTLVTSVASFHTPNKADSR 481
>SB_1253| Best HMM Match : TraD (HMM E-Value=1.5)
Length = 213
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 96 KGTLPRVED--GMIVNSRVTVVSPNPSSKRRQK 188
+G RV++ G++ R T+ PN S RRQ+
Sbjct: 105 QGNTERVQELQGVVATGRETIDDPNTSESRRQE 137
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 236 RSQVALKRCKHFELGGD 286
RS++A RC H LGGD
Sbjct: 504 RSRIAFTRCAHGPLGGD 520
>SB_37967| Best HMM Match : DUF1279 (HMM E-Value=0.28)
Length = 233
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQKPLRK 200
G++ R T+ PN S RRQ+ L +
Sbjct: 23 GVVATDRETIDDPNTSESRRQEALER 48
>SB_19210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 331
Score = 26.2 bits (55), Expect = 7.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQKPLRK 200
G++ R T+ PN S RRQ+ L +
Sbjct: 23 GVVATDRETIDDPNTSESRRQEALER 48
>SB_50443| Best HMM Match : NinG (HMM E-Value=5.6)
Length = 477
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 161 WTDHRNPAVYDHTVFYPGQ 105
W D RN + D VFYPG+
Sbjct: 339 WKDGRNHGLGDVFVFYPGE 357
>SB_35570| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 663
Score = 25.8 bits (54), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 294 LFLSPPSSKCLHLFNATCDLTLQSAHSRRS 205
L L+ S+C ++ CD Q HSRR+
Sbjct: 362 LMLTTYGSQCKAIYEQPCDPRPQEGHSRRT 391
>SB_22296| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 681
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQKPLRKLCS 209
G++ R T+ PN S RRQ+ L + +
Sbjct: 122 GVVTTDRETIDDPNTSESRRQEALGSIAN 150
>SB_9259| Best HMM Match : bZIP_1 (HMM E-Value=3.5)
Length = 205
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQK 188
G++V R T+ PN S RRQ+
Sbjct: 127 GVVVTDRKTIDDPNTSESRRQE 148
>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
Length = 763
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -2
Query: 111 WAACLSLDFLYCDTLCTLWHL 49
W L F+ C TLC W L
Sbjct: 331 WVGAWWLGFVVCGTLCIFWSL 351
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 18 QNSAGRTAKNVNATKYTRYH 77
+NS+GRT KN++AT H
Sbjct: 141 KNSSGRTCKNISATHKLSLH 160
>SB_52514| Best HMM Match : DUF1086 (HMM E-Value=1.3)
Length = 334
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 123 GMIVNSRVTVVSPNPSSKRRQK 188
G++V R T+ PN S RRQ+
Sbjct: 127 GVVVTDRKTIDDPNTSESRRQE 148
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 25.8 bits (54), Expect = 9.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 182 PSF*RWVWTDHRNPA 138
P+ +WVW +H NPA
Sbjct: 306 PARQKWVWYEHENPA 320
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,137,763
Number of Sequences: 59808
Number of extensions: 229916
Number of successful extensions: 1022
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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