Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D06f
(349 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal... 130 9e-31
CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein. 130 9e-31
BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein L36a-... 130 9e-31
BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein L36a-... 130 9e-31
BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein L36a-... 130 9e-31
BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein L36a-... 130 9e-31
AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein L36a-... 130 9e-31
U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protei... 129 2e-30
CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein. 129 2e-30
BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a ... 129 2e-30
BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a ... 129 2e-30
BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a ... 129 2e-30
BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a ... 129 2e-30
AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting ... 129 2e-30
AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing prot... 129 2e-30
AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a ... 129 2e-30
BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein. 44 1e-04
Z15026-1|CAA78745.1| 233|Homo sapiens tumor necrosis factor, Tn... 28 9.3
Y14768-11|CAA75070.1| 232|Homo sapiens tumor necrosis facor pro... 28 9.3
X02910-1|CAA26669.1| 233|Homo sapiens TNF-alpha protein. 28 9.3
X01394-1|CAA25650.1| 233|Homo sapiens protein ( Human mRNA for ... 28 9.3
M26331-1|AAA36758.1| 233|Homo sapiens protein ( Human tumor nec... 28 9.3
M16441-2|AAA61200.1| 233|Homo sapiens protein ( Human tumor nec... 28 9.3
M10988-1|AAA61198.1| 233|Homo sapiens TNFA protein. 28 9.3
BX248519-2|CAI41940.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
BC028148-1|AAH28148.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
BA000025-36|BAB63396.1| 233|Homo sapiens Cytokine protein. 28 9.3
AY214167-1|AAO21132.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
AY066019-1|AAL47581.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
AL929587-2|CAI18649.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
AL662847-39|CAI17678.1| 233|Homo sapiens tumor necrosis factor ... 28 9.3
AL662801-23|CAI18292.1| 233|Homo sapiens tumor necrosis factor ... 28 9.3
AL022327-1|CAO03519.1| 336|Homo sapiens novel protein (FLJ41993... 28 9.3
AK123987-1|BAC85743.1| 336|Homo sapiens egion. protein. 28 9.3
AF129756-22|AAD18091.1| 233|Homo sapiens tumor necrosis factor ... 28 9.3
AF098751-1|AAF71992.1| 66|Homo sapiens APC1 protein protein. 28 9.3
AB202113-2|BAE78639.1| 233|Homo sapiens tumor necrosis factor (... 28 9.3
AB103618-2|BAF31279.1| 233|Homo sapiens TNFA protein protein. 28 9.3
AB088112-2|BAC54944.1| 233|Homo sapiens tumor necrosis factor p... 28 9.3
>M15661-1|AAA36589.1| 106|Homo sapiens protein ( Human ribosomal
protein mRNA, complete cds. ).
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>CR542166-1|CAG46963.1| 106|Homo sapiens RPL36AL protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC107716-1|AAI07717.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC070207-1|AAH70207.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC003145-1|AAH03145.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC000741-1|AAH00741.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AB063609-1|BAC19836.1| 106|Homo sapiens ribosomal protein
L36a-like protein.
Length = 106
Score = 130 bits (315), Expect = 9e-31
Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQGRRRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>U78027-3|AAB64204.1| 106|Homo sapiens L44-like ribosomal protein
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>CR542198-1|CAG46995.1| 106|Homo sapiens RPL36A protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC070204-1|AAH70204.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC062219-1|AAH62219.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC031015-1|AAH31015.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC001781-1|AAH01781.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AY927233-1|AAX08138.1| 106|Homo sapiens cell growth-inhibiting
protein 15 protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AY305871-1|AAQ95213.1| 106|Homo sapiens migration-inducing protein
6 protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>AL035422-5|CAI42360.1| 106|Homo sapiens ribosomal protein L36a
protein.
Length = 106
Score = 129 bits (312), Expect = 2e-30
Identities = 62/106 (58%), Positives = 73/106 (68%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXXSQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXX 184
MVNVPK RRT+ +QYKK K+ AQG+RRYDRKQ GYGGQ+KPIF
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 185 XXXXXIVLRLECAD--CKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLRLEC + C+ + +A+KRCKHFELGGDKKRKGQ+IQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>BC058160-1|AAH58160.1| 25|Homo sapiens LOC554234 protein protein.
Length = 25
Score = 44.4 bits (100), Expect = 1e-04
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +2
Query: 245 VALKRCKHFELGGDKKRKGQMIQF 316
+ +KR KHF+LGGDKKRKGQ+IQF
Sbjct: 2 LTIKRYKHFKLGGDKKRKGQVIQF 25
>Z15026-1|CAA78745.1| 233|Homo sapiens tumor necrosis factor, Tnfa
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>Y14768-11|CAA75070.1| 232|Homo sapiens tumor necrosis facor
protein.
Length = 232
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 166 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 194
>X02910-1|CAA26669.1| 233|Homo sapiens TNF-alpha protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>X01394-1|CAA25650.1| 233|Homo sapiens protein ( Human mRNA for
tumor necrosis factor. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M26331-1|AAA36758.1| 233|Homo sapiens protein ( Human tumor
necrosis factor gene, complete cds. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M16441-2|AAA61200.1| 233|Homo sapiens protein ( Human tumor
necrosis factor and lymphotoxin genes, complete cds. ).
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>M10988-1|AAA61198.1| 233|Homo sapiens TNFA protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BX248519-2|CAI41940.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BC028148-1|AAH28148.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>BA000025-36|BAB63396.1| 233|Homo sapiens Cytokine protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AY214167-1|AAO21132.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AY066019-1|AAL47581.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL929587-2|CAI18649.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL662847-39|CAI17678.1| 233|Homo sapiens tumor necrosis factor
(TNF superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL662801-23|CAI18292.1| 233|Homo sapiens tumor necrosis factor
(TNF superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AL022327-1|CAO03519.1| 336|Homo sapiens novel protein (FLJ41993)
protein.
Length = 336
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 315 NWIICPF---LFLSPPSSKCLHLFNATCDLTLQSAHSR 211
+W+ CPF F +PP+S+C + + +AHSR
Sbjct: 280 SWVRCPFEQRRFPTPPTSRCTCVTGGSHSSLPANAHSR 317
>AK123987-1|BAC85743.1| 336|Homo sapiens egion. protein.
Length = 336
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -2
Query: 315 NWIICPF---LFLSPPSSKCLHLFNATCDLTLQSAHSR 211
+W+ CPF F +PP+S+C + + +AHSR
Sbjct: 280 SWVRCPFEQRRFPTPPTSRCTCVTGGSHSSLPANAHSR 317
>AF129756-22|AAD18091.1| 233|Homo sapiens tumor necrosis factor
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AF098751-1|AAF71992.1| 66|Homo sapiens APC1 protein protein.
Length = 66
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 19 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 47
>AB202113-2|BAE78639.1| 233|Homo sapiens tumor necrosis factor (TNF
superfamily, member 2) protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AB103618-2|BAF31279.1| 233|Homo sapiens TNFA protein protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
>AB088112-2|BAC54944.1| 233|Homo sapiens tumor necrosis factor
protein.
Length = 233
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 260 ISSMQPVISPCNRHTQDGAQFS*WFLPSF 174
++ + + SPC R T +GA+ W+ P +
Sbjct: 167 VNLLSAIKSPCQRETPEGAEAKPWYEPIY 195
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,938,513
Number of Sequences: 237096
Number of extensions: 1069694
Number of successful extensions: 2468
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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