Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D06f
(349 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical pr... 126 4e-30
AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal... 126 4e-30
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 28 2.1
L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z74029-3|CAE17749.1| 113|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical pr... 26 8.5
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 26 8.5
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 26 8.5
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 26 8.5
AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical ... 26 8.5
>Z50109-2|CAA90434.1| 105|Caenorhabditis elegans Hypothetical
protein C09H10.2 protein.
Length = 105
Score = 126 bits (304), Expect = 4e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 181
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 182 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>AF304121-1|AAG50234.1| 105|Caenorhabditis elegans 60S ribosomal
protein L44 L41 protein.
Length = 105
Score = 126 bits (304), Expect = 4e-30
Identities = 60/105 (57%), Positives = 71/105 (67%), Gaps = 1/105 (0%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXX-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 181
MVNVPK RRT+ +QYKK KE AQGRRRYDRKQ G+GGQ+KPIF
Sbjct: 1 MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60
Query: 182 XXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 316
IVLR+EC +CK + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 61 AKTTKKIVLRMECTECKHKKQLPIKRCKHFELGGQKKSRGQVIQF 105
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 15 YQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPL 194
Y +AGRT + + + KS R LP++++ + +V+ P S R+K L
Sbjct: 86 YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145
Query: 195 RK 200
RK
Sbjct: 146 RK 147
>L23646-1|AAA28041.1| 244|Caenorhabditis elegans Hypothetical
protein F44E2.3 protein.
Length = 244
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 206 LRLECADCKVRSQVALKRCKHFELGGDKK 292
+ +E A+CK R + + K+CK E ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180
>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical
protein F47A4.5 protein.
Length = 1071
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 48 VNATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPS--SKRRQKP 191
V+ T +T SP + PR+E+G+ + V++V P+ +K +KP
Sbjct: 196 VDKKNITTSSTTSSPSRQITPRIENGLSFENVVSLVKIFPAFVNKLLKKP 245
>Z74029-3|CAE17749.1| 113|Caenorhabditis elegans Hypothetical
protein C45B11.5 protein.
Length = 113
Score = 25.8 bits (54), Expect = 8.5
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = -3
Query: 86 FCTVIPCVLCGIYIFCSTSCAVLVR 12
FC V+ + GI++ C C +R
Sbjct: 25 FCLVVTFITIGIFLLCGAWCIYAIR 49
>Z70681-2|CAA94578.2| 203|Caenorhabditis elegans Hypothetical
protein C30F2.2 protein.
Length = 203
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +3
Query: 48 VNATKYTRYHSTKSPRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKPLRKL 203
VNAT+ +R ++ + + + + I N+ ++ P P S+RR + LR+L
Sbjct: 108 VNATRRSR----RTALETAVDKTQQREIENNWISQHIPAPESRRRDRSLRRL 155
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 51 NATKYTRYHSTKSPRKGTLPRVEDGMIVNSR 143
N +Y + + +S K PRVEDG + + R
Sbjct: 473 NDVRYEKPYEKRSASKPRAPRVEDGAVSSFR 503
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 93 LDFLYCDTLCTLWHLHFLQYVLRCFGTFT 7
++ + C+T L FL +V C+GT T
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHT 764
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 93 LDFLYCDTLCTLWHLHFLQYVLRCFGTFT 7
++ + C+T L FL +V C+GT T
Sbjct: 736 IELIQCETSVKLLDRRFLMHVSICYGTHT 764
>AF026201-1|AAB71239.1| 113|Caenorhabditis elegans Hypothetical
protein D1079.1 protein.
Length = 113
Score = 25.8 bits (54), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 107 QRAFPW-TFCTVIPCVLCGIYIFC 39
QR++P+ TF + +LC +YI C
Sbjct: 30 QRSYPFQTFLAFLDFMLCALYIHC 53
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,114,059
Number of Sequences: 27780
Number of extensions: 161369
Number of successful extensions: 514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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