Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D06f
(349 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB) 114 2e-26
At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA... 114 2e-26
At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near... 29 1.1
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 27 2.6
At5g42900.2 68418.m05229 expressed protein similar to unknown pr... 27 4.5
At5g42900.1 68418.m05228 expressed protein similar to unknown pr... 27 4.5
At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger) fa... 27 4.5
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 26 6.0
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ... 26 6.0
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ... 26 6.0
At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger) fa... 26 6.0
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 26 7.9
At1g13390.2 68414.m01559 expressed protein 26 7.9
At1g13390.1 68414.m01558 expressed protein 26 7.9
>At4g14320.1 68417.m02206 60S ribosomal protein L36a/L44 (RPL36aB)
Length = 105
Score = 114 bits (274), Expect = 2e-26
Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 178
MVN+PK + TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 179 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 301
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101
>At3g23390.1 68416.m02949 60S ribosomal protein L36a/L44 (RPL36aA)
similar to ribosomal protein L41 GB:AAA34366 from
[Candida maltosa]
Length = 105
Score = 114 bits (274), Expect = 2e-26
Identities = 55/101 (54%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 5 MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 178
MVN+PK + TY +QYKK K+ AAQG+RRYDRKQ GYGGQ+KP+F
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 179 XXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKG 301
IVLRL+C CK SQ +KRCKHFE+GGDKK KG
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKG 101
>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
identical to RelA/SpoT homolog RSH2 [Arabidopsis
thaliana] GI:7141306; contains Pfam profiles PF01966: HD
domain, PF04607: Region found in RelA / SpoT proteins
Length = 709
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 294 LFLSPPSSKCLHLFNATCDLTLQSAHSRRST 202
L+ SPPSS C +CDL L S S S+
Sbjct: 9 LYASPPSSVCSTPHQISCDLDLTSRSSSTSS 39
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 27.5 bits (58), Expect = 2.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 74 IPCVLCGIYIFCSTSCAV 21
+PC C I ++CS SC +
Sbjct: 275 VPCPSCSIPVYCSESCQI 292
>At5g42900.2 68418.m05229 expressed protein similar to unknown
protein (pir||T05226)
Length = 245
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 21 NSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDG 125
NS G KN N ++ TR+ S + P + + DG
Sbjct: 70 NSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDG 104
>At5g42900.1 68418.m05228 expressed protein similar to unknown
protein (pir||T05226)
Length = 246
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 21 NSAGRTAKNVNATKYTRYHSTKSPRKGTLPRVEDG 125
NS G KN N ++ TR+ S + P + + DG
Sbjct: 70 NSLGALGKNENVSESTRFGSGRKPSQEQFKVLHDG 104
>At4g11680.1 68417.m01866 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|Q9WTV7 RING finger
protein 12 (LIM domain interacting RING finger protein)
{Mus musculus}; contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 390
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/44 (25%), Positives = 21/44 (47%)
Frame = -3
Query: 146 NPAVYDHTVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 15
+P +Y + + G F FC + CV+ G+ + C C + +
Sbjct: 236 SPQLYWLCIIFLGFDVFFVVFCVALACVI-GLAVCCCLPCIIAI 278
>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
to HD-zip transcription factor Revoluta (GI:9759333)
{Arabidopsis thaliana}; contains Pfam profiles PF01852:
START domain and PF00046: Homeobox domain
Length = 842
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 141 RVTVVSPNPSSKRRQKPLRKLCSVLS 218
RV P PSS RRQ+ +R+ CS+L+
Sbjct: 39 RVYAECPKPSSLRRQQLIRE-CSILA 63
>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 626
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 233 VRSQVALKRCKHFELGGDKKRKGQMIQF 316
+R+ + L+RC H+++ KR+ QM F
Sbjct: 60 IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87
>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
supporting cDNA gi|14276049|dbj|AB053171.1|
Length = 631
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 233 VRSQVALKRCKHFELGGDKKRKGQMIQF 316
+R+ + L+RC H+++ KR+ QM F
Sbjct: 60 IRNPLFLQRCLHYKIEAKHKRRIQMTVF 87
>At1g55530.1 68414.m06353 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 351
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 344 QWSYLLEAFKIGSSVPFSSCHHRAQSACISSMQPVISPC 228
Q S L+ F+IG+ C H+ S C+ + S C
Sbjct: 222 QCSVCLDDFEIGTEAKLMPCTHKFHSDCLLPWLELHSSC 260
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 25.8 bits (54), Expect = 7.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 24 SAGRTAKNVNATKYTRYHSTKSPR 95
S+G + + NATK +HS+ +P+
Sbjct: 461 SSGSSLSSANATKRNNHHSSSTPK 484
>At1g13390.2 68414.m01559 expressed protein
Length = 176
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 90 PRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKP 191
P + + P +D + + V SP+PS+ R KP
Sbjct: 99 PSRVSNPLTKDSLFREELLMVASPSPSTPRATKP 132
>At1g13390.1 68414.m01558 expressed protein
Length = 176
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 90 PRKGTLPRVEDGMIVNSRVTVVSPNPSSKRRQKP 191
P + + P +D + + V SP+PS+ R KP
Sbjct: 99 PSRVSNPLTKDSLFREELLMVASPSPSTPRATKP 132
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,618,099
Number of Sequences: 28952
Number of extensions: 146668
Number of successful extensions: 462
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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