Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...   147   1e-36
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...   144   5e-36
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   0.97 
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   1.7  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.9  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   5.2  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   5.2  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    25   6.8  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.8  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    25   9.0  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    25   9.0  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score =  147 bits (356), Expect = 1e-36
 Identities = 64/129 (49%), Positives = 90/129 (69%), Gaps = 2/129 (1%)
 Frame = -3

Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
           GKV L+  GR+AG+K ++++  D+G+   P+GHA VAG++RYP KV K MG  +I +RS+
Sbjct: 8   GKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSR 67

Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 70
           +KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R   R   +  FEE+Y+SGK+
Sbjct: 68  VKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKS 127

Query: 69  KWFFQKLRF 43
            WFF  LRF
Sbjct: 128 AWFFTPLRF 136


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score =  144 bits (350), Expect = 5e-36
 Identities = 62/129 (48%), Positives = 90/129 (69%), Gaps = 2/129 (1%)
 Frame = -3

Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
           GKV LV  GR+AG+K ++++N D+G+   P+GHA VAG++RYP KV K MG  +I KRS+
Sbjct: 8   GKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSR 67

Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 70
           +KPF+KV+NYNHLMPTRY ++    K   +     +P++R   +   +  FEE+Y++GK+
Sbjct: 68  VKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKS 127

Query: 69  KWFFQKLRF 43
            WFF  LRF
Sbjct: 128 AWFFTPLRF 136


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 273 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 139
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 423 GKVVLVLSGRYAGRKAIVVKNYD 355
           G+VVLV  G Y G+ A++V   D
Sbjct: 11  GRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 368 SRITTKVPPTSHTGMPSSLVSTGT 297
           SR+ T +PP S + +P+  +ST +
Sbjct: 177 SRLPTPLPPPSSSSLPTGTISTNS 200


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 180 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 46
           +SF  F   D K+  K K        R  E Y   +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 142 VFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLY 243
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 291 KVHKRMGKNKIHKRSKIKPFVKVV 220
           K+ KR+G   I   SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 186 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 70
           + F       K L DP+ R+K  F ++   + +Y+  KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 186 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 88
           VD++ E+F      DP+     + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 FKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSH 276
           F   V  I C H V  + +   ++  GP ++F++ H
Sbjct: 90  FDNRVGVIECIHLVNFMCHDSLKINFGPRINFVIGH 125


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 88  PLFKTYSRVETQLLTFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFI 267
           P+++ +  +     T S +    CA+F   E N  + WH     YNL  R Y   + D +
Sbjct: 749 PVYEDWHLLIFNASTSSMMKTWLCAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNV 805

Query: 268 LSHP 279
              P
Sbjct: 806 SDLP 809


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = -3

Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTR 106
           + PF K   Y H + T  +   S  KF   +     K K  R +TR
Sbjct: 39  VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,774
Number of Sequences: 5004
Number of extensions: 44344
Number of successful extensions: 136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)