Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 140 5e-34
10_08_0951 - 21769342-21769752 140 6e-34
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 31 0.42
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 30 1.3
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 30 1.3
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 29 1.7
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 29 1.7
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 2.3
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 29 2.3
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 2.3
10_02_0059 + 4785858-4786988 29 3.0
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 29 3.0
09_02_0555 - 10588685-10592038 29 3.0
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 3.0
03_02_1029 - 13488535-13493037 29 3.0
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 28 4.0
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 28 4.0
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 5.2
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 27 6.9
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 27 6.9
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 27 6.9
08_01_0649 + 5607234-5608397,5609358-5609513,5609598-5609796,561... 27 9.1
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 27 9.1
>02_02_0470 - 10700092-10700505
Length = 137
Score = 140 bits (340), Expect = 5e-34
Identities = 64/130 (49%), Positives = 93/130 (71%), Gaps = 3/130 (2%)
Frame = -3
Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
GK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K+S+
Sbjct: 8 GKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSR 67
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR-KKLRF--NTRVRFEERYKSGK 73
+K F+K+VN+ H+MPTRYT+D F+ ++ A R KK+ + R EER+K+GK
Sbjct: 68 VKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKVAACKAAKARLEERFKTGK 127
Query: 72 NKWFFQKLRF 43
N+WFF KLRF
Sbjct: 128 NRWFFTKLRF 137
>10_08_0951 - 21769342-21769752
Length = 136
Score = 140 bits (339), Expect = 6e-34
Identities = 61/129 (47%), Positives = 93/129 (72%), Gaps = 2/129 (1%)
Frame = -3
Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
GK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++ K K+S+
Sbjct: 8 GKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSR 67
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF--NTRVRFEERYKSGKN 70
+K F+K+VN+ HLMPTRYT+D ++ +A + KK+ + + R E+R+K+GKN
Sbjct: 68 VKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLEDRFKTGKN 127
Query: 69 KWFFQKLRF 43
+WFF KLRF
Sbjct: 128 RWFFTKLRF 136
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 31.5 bits (68), Expect = 0.42
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Frame = -2
Query: 409 GPKWPVRGSQGYRSQELRRRYLRQAIRACLRRWYRQ--VPPE-SAQEDGKE*N-PQEVQD 242
G KW + + RS E +R ++ +AIR +R + ++ +PP DG E N +EV D
Sbjct: 1000 GNKWDMCTKEHSRSNEFKRLFVPEAIRKLIRPYDKELSIPPVFPGVHDGNEVNSKEEVND 1059
Query: 241 KA 236
+
Sbjct: 1060 SS 1061
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKLKSTV*RV 199
RSFL LAG +R F NFSK+ ++ R+
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRL 479
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -2
Query: 394 VRGSQGYRSQELRRRYLRQAIRACLRRWYRQVPPESAQ--EDGKE*NPQEVQDKAFRQ 227
V G+ G + ++RR+L QA+ + R R PP +A E + P +++ AF +
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARGEANRSWQPPPLENPAFEE 81
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 130 TFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSHPLVHF 291
TF + F + E + WH++I YNL++ +YL + D V+F
Sbjct: 298 TFKKAFHKVLTQTLTEE-EFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 350
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 130 TFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSHPLVHF 291
TF + F + E + WH++I YNL++ +YL + D V+F
Sbjct: 296 TFKKAFHKVLTQTLTEE-EFVAAWHKLIRDYNLEKSVYLRHIWDIRRKWAFVYF 348
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKLKSTV*RV 199
RSFL LAG +R F NFSK+ + R+
Sbjct: 954 RSFLGLAGYYRRFIENFSKIDKPMTRL 980
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 505 RSFLGLAGYYRRFIKNFSKI 524
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKLKSTV*RV 199
RSFL LAG +R F NFSK+ + R+
Sbjct: 985 RSFLGLAGYYRRFIENFSKIAKPMTRL 1011
>10_02_0059 + 4785858-4786988
Length = 376
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 224 RSFLGLAGYYRRFIENFSKI 243
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 281 RSFLGLAGYYRRFIENFSKI 300
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 411 RSFLGLAGYYRRFIENFSKI 430
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 1071 RSFLGLAGYYRRFIENFSKI 1090
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFSK+
Sbjct: 794 RSFLGLAGYYRRFIENFSKI 813
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 28.3 bits (60), Expect = 4.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = -3
Query: 309 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSF----EKFSAKDLK 145
I Y R++ M ++ + K+K F +NY+H R T ++ E S KDLK
Sbjct: 919 IGTYNRELTSNMRILRMERCDKLKDFTLFLNYDHFRVERKTWQWTILPFEEMHSLKDLK 977
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 28.3 bits (60), Expect = 4.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -3
Query: 429 TRGKVVLVLSGRYAGRKAIVVKNYDEG 349
T G V+++L+GRY G++ + +K G
Sbjct: 76 TPGTVLILLAGRYMGKRVVFLKQLKSG 102
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -3
Query: 405 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 259
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +1
Query: 130 TFSRVFQVFCAEFFKAEVNCITCWHQVIIVYNLDERLYLGPLVDFILSHPLVHF 291
TF +VF + E + WH++I YNL++ + L + D V+F
Sbjct: 298 TFKKVFHKVLTQTLTEE-EFVAAWHKLIRDYNLEKSVNLRHIWDIRRKWAFVYF 350
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 119 RSFLRLAGSFRSFALNFSKL 178
RSFL LAG +R F NFS++
Sbjct: 641 RSFLGLAGYYRRFIENFSRI 660
>02_05_1276 + 35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 325 MPVWLVGGTFVVILDYDSLATRVPAT 402
+ WLVGGT + I+ +L R+PA+
Sbjct: 1111 LTAWLVGGTALQIVSVPALNFRIPAS 1136
>08_01_0649 +
5607234-5608397,5609358-5609513,5609598-5609796,
5612419-5613608,5614505-5614660,5614742-5615041
Length = 1054
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = -3
Query: 363 NYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTV 184
++DE HA G + + G + I P +K++ HL TR+T
Sbjct: 613 SHDEDDVSAWIAHAVRRGAEEIDLSARRHHGYPVPDYKHFISPKIKILKLTHLGTTRFTA 672
Query: 183 D 181
D
Sbjct: 673 D 673
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = -3
Query: 294 RKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF 115
R H R+ N + S+ ++ N PT F + KD P +R R
Sbjct: 292 RSKHGRLDDNLTDENSERLWKMEPFNSEDRFPTPIVEQFDTRDYGFKDRYSPEQRTSTRT 351
Query: 114 NTR 106
NTR
Sbjct: 352 NTR 354
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,816,442
Number of Sequences: 37544
Number of extensions: 284132
Number of successful extensions: 846
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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