Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 184 5e-47
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30) 28 4.1
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 28 5.4
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 28 5.4
SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 27 9.4
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 27 9.4
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 184 bits (447), Expect = 5e-47
Identities = 87/132 (65%), Positives = 103/132 (78%), Gaps = 2/132 (1%)
Frame = -3
Query: 438 EFGTRGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKI 259
+F GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK +
Sbjct: 3 KFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKKRT 62
Query: 258 HKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRFEERY 85
KRSK+KPFVKV NYNHLMPTRY+VD +K KD+ +DPA +KK + EERY
Sbjct: 63 AKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTLEERY 122
Query: 84 KSGKNKWFFQKL 49
KSGKNKWFFQKL
Sbjct: 123 KSGKNKWFFQKL 134
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -3
Query: 159 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 43
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_56358| Best HMM Match : Fork_head (HMM E-Value=1.2e-30)
Length = 289
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/61 (31%), Positives = 27/61 (44%)
Frame = -2
Query: 367 QELRRRYLRQAIRACLRRWYRQVPPESAQEDGKE*NPQEVQDKAFRQGCKL*SLDANTLY 188
+E R+ L A R R Y + PE GK P+ + +R GCK + N LY
Sbjct: 171 RETSRKELEYASR--FRPAYARYAPELGCRTGKNQEPKRITRVQWRFGCKFPNPVTNELY 228
Query: 187 S 185
+
Sbjct: 229 A 229
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 357 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 211
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 309 IDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMP-TRYTVDFSFEKFSAKDLKDPAK 133
I Y KVH K + + ++K+ PF K N ++P + V +FEK++A + +K
Sbjct: 1083 IKMYMEKVHYYKAKVETYYKTKVMPFYK----NKVVPFYKNKVIPAFEKYTAL-ADELSK 1137
Query: 132 RKKLRFNTRVRFEERYK 82
LR T + YK
Sbjct: 1138 NMTLRAKTYILNSRPYK 1154
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 171 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 46
++ S D +D +KRK++RF FE + YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
>SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -2
Query: 358 RRRYLRQAI---RACLRRWYRQVPPESAQEDG---KE*NPQEVQDKAFRQGCK 218
+RR L I +AC+ +WY++V P +A + G K N + ++ K F+ K
Sbjct: 6 KRRTLENIIENFKACVLKWYQEVDPTNAIKRGQIAKTFNDEIIRFKRFQAAYK 58
>SB_11435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = -3
Query: 330 GHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD 151
GH F++ ID++ RK HK +KI R+ IK ++Y+ + T+ +D ++ A
Sbjct: 99 GHRFLSLIDKHFRKDHK---LSKIFNRNTIK-----ISYSCMSNTKQIIDSHSKRIIASS 150
Query: 150 L 148
+
Sbjct: 151 I 151
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 162 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 46
SAK+L++ +RK+ +NT E RY+ K K Q R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 287 TFRGYLSIPATKACPYGLSEVPSS*FLTTIALRPAYRPLRTSTTLPLVPNSA 442
T G +P + G+ +P S FLTT +Y P T P VP+S+
Sbjct: 263 TANGTRDVPQSNFLTTGIPVIPQSNFLTTRTPVMSYSP-TTENGTPDVPHSS 313
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,257
Number of Sequences: 59808
Number of extensions: 328342
Number of successful extensions: 875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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