Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D03f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 179 1e-45
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 179 1e-45
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 1.5
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 1.5
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 1.5
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 29 2.0
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 29 2.0
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 29 2.0
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 3.5
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 3.5
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 3.5
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 28 4.7
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 27 6.2
AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical ... 27 6.2
Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 179 bits (435), Expect = 1e-45
Identities = 82/129 (63%), Positives = 102/129 (79%), Gaps = 2/129 (1%)
Frame = -3
Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
GKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K
Sbjct: 8 GKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNK 67
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 70
+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEERYK+GKN
Sbjct: 68 LKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKN 127
Query: 69 KWFFQKLRF 43
KWFF KLRF
Sbjct: 128 KWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 179 bits (435), Expect = 1e-45
Identities = 82/129 (63%), Positives = 102/129 (79%), Gaps = 2/129 (1%)
Frame = -3
Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
GKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK KI KR+K
Sbjct: 8 GKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNK 67
Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 70
+KPF+KVV+Y HL+PTRY+VD +F+K + + LK P+K++K + +FEERYK+GKN
Sbjct: 68 LKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKN 127
Query: 69 KWFFQKLRF 43
KWFF KLRF
Sbjct: 128 KWFFTKLRF 136
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 315 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 166
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 315 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 166
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 315 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 166
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -3
Query: 345 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 184
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 183 --DFS-FEKFSAKDLKDP 139
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -3
Query: 345 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 184
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 402
Query: 183 --DFS-FEKFSAKDLKDP 139
D S F+ F +DL P
Sbjct: 403 IDDTSNFDDFPDEDLTWP 420
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -3
Query: 345 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 184
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 395
Query: 183 --DFS-FEKFSAKDLKDP 139
D S F+ F +DL P
Sbjct: 396 IDDTSNFDDFPDEDLTWP 413
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 95 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 190
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 95 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 190
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +2
Query: 95 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 190
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 27.9 bits (59), Expect = 4.7
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Frame = -3
Query: 345 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLM----PTRYTV-- 184
SD P A I R+ + +R+G + K PFVK +++NH+ P R TV
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVTVKS 344
Query: 183 --DFS-FEKFSAKDLKDP 139
D S F+ F +DL P
Sbjct: 345 IDDTSNFDDFPDEDLTWP 362
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -3
Query: 315 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 166
AG++R V + N+ KR KI + YNHL+P T+D+S K
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVP---TIDYSAMK 430
>AC024805-8|AAK39337.2| 169|Caenorhabditis elegans Hypothetical
protein Y51H7C.4 protein.
Length = 169
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +1
Query: 214 IVYNLDERLYLGPLVDFILSHPLVHFPGVPVDTSDEGMPVWLVGGTFVVI 363
I + L ER PL+ L ++ G +S+ +P+WL G F+++
Sbjct: 54 IRFFLSERS-AAPLISMSLGQTAIYLSGTIDLSSEPPIPIWLRNGDFLIM 102
>Z46791-3|CAA86757.1| 323|Caenorhabditis elegans Hypothetical
protein C09G5.4 protein.
Length = 323
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -1
Query: 344 PTSHTGMPSSLVSTGTPGKCTRGWERIKSTRGP 246
P G P + + G PG+ RG +R GP
Sbjct: 175 PAGDAGAPGQVGAPGNPGQAGRGGQRSHGLPGP 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,870,184
Number of Sequences: 27780
Number of extensions: 245757
Number of successful extensions: 863
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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