Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   0.82 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.9  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   3.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 362 ITTKVPPTSHTGMPSSLVSTGTP 294
           IT + PP  HT      VS GTP
Sbjct: 608 ITIQEPPQWHTRSTEKRVSAGTP 630


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 512 AKAIFIGNVSLVYCSCAKTKCPLVPNSARGV 420
           A A+ + N+    CS  K  CP + N  RGV
Sbjct: 339 AFALALHNLQKDVCSKLKGLCPSMANYDRGV 369


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 512 AKAIFIGNVSLVYCSCAKTKCPLVPNSARGV 420
           A A+ + N+    CS  K  CP + N  RGV
Sbjct: 429 AFALALHNLQKDVCSKLKGLCPSMANYDRGV 459


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 387 PRTGHLGPALLYP 425
           PR  H+GP+ L+P
Sbjct: 139 PRFRHIGPSTLFP 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,647
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)