Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D03f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...   146   8e-36
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)           144   3e-35
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)           141   2e-34
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.82 
At4g34630.1 68417.m04918 expressed protein                             29   1.9  
At1g72440.1 68414.m08377 CCAAT-box-binding transcription factor-...    29   1.9  
At1g66070.1 68414.m07499 translation initiation factor-related s...    29   1.9  
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    28   3.3  
At5g12000.1 68418.m01403 protein kinase family protein contains ...    28   4.4  
At1g52990.1 68414.m05997 thioredoxin family protein similar to S...    27   7.7  
At1g50820.1 68414.m05715 hypothetical protein                          27   7.7  
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ...    27   7.7  

>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score =  146 bits (354), Expect = 8e-36
 Identities = 63/133 (47%), Positives = 94/133 (70%), Gaps = 1/133 (0%)
 Frame = -3

Query: 438 EFGTRGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKI 259
           +F  + K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP KV ++    K 
Sbjct: 3   KFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKT 62

Query: 258 HKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEERYK 82
            K+S++K F+K+VNY HLMPTRYT+D   ++ +  D LK   K+       + + EER+K
Sbjct: 63  AKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFK 122

Query: 81  SGKNKWFFQKLRF 43
           +GKN+WFF KLRF
Sbjct: 123 TGKNRWFFTKLRF 135


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score =  144 bits (349), Expect = 3e-35
 Identities = 61/133 (45%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = -3

Query: 438 EFGTRGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKI 259
           +F  + K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP KV ++    K 
Sbjct: 3   KFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKT 62

Query: 258 HKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEERYK 82
            K+S++K F+K+VNY HLMPTRYT+D   ++ +  D L+   K+       + + EER+K
Sbjct: 63  AKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFK 122

Query: 81  SGKNKWFFQKLRF 43
           +GKN+WFF KLRF
Sbjct: 123 TGKNRWFFTKLRF 135


>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score =  141 bits (342), Expect = 2e-34
 Identities = 61/128 (47%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
 Frame = -3

Query: 423 GKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
           GK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP KV ++    K  K+S+
Sbjct: 8   GKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSR 67

Query: 243 IKPFVKVVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 67
           +K F KV+NY H+MPTRYT+D   +   SA  +    K+       + +FEER+K+GKN+
Sbjct: 68  VKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGKNR 127

Query: 66  WFFQKLRF 43
           WFF KLRF
Sbjct: 128 WFFTKLRF 135


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 117 FNTRVRFEERYKSGKNKWFF 58
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At4g34630.1 68417.m04918 expressed protein
          Length = 199

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 357 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 244
           D+G  D+ Y  ++    +  PR V K++G+ ++ K  K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167


>At1g72440.1 68414.m08377 CCAAT-box-binding transcription
            factor-related similar to CCAAT-box-binding transcription
            factor (CCAAT-binding factor) (CBF) (Swiss-Prot:Q03701)
            [Homo sapiens], GB:P53569 [Mus musculus]
          Length = 1056

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 279  RMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKK 124
            R  K K  KR +  PF  +  Y HL+      D    K   K   +P K+KK
Sbjct: 1000 RSKKKKKEKRKRKSPFASLEEYKHLIDQDEKED---SKTKRKATSEPTKKKK 1048


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -3

Query: 246 KIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 67
           +IKP+ K  +Y  L+ T   +  S     A D+KD A       N +++ E+   +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 83  LYLSSKRTRVLKRSFLRLAGSFRSFALNFS-KLKSTV*RVGIK*L*FTTLTKGFILDLLW 259
           LY     +  L+ SF+R   S  S  L  +  + +TV +V    + FTT T GF L +L 
Sbjct: 15  LYPMMSESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFTTTTAGFALYILL 74

Query: 260 ILFFPILLCTFRGY 301
           IL   I++C    Y
Sbjct: 75  ILTPLIVMCPLYYY 88


>At5g12000.1 68418.m01403 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 703

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -3

Query: 306 DRYPRKVHKRMGKNKIHKR-SKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR 130
           DR PR   +R G+N + +R S      K V   H +PT  ++DF++E    K  ++   R
Sbjct: 188 DRSPRS--QRNGRNTVPERYSHENKGFKPVREMHKIPTNGSLDFNYEFRQGKGQRNSTGR 245


>At1g52990.1 68414.m05997 thioredoxin family protein similar to
           SP|P48384 Thioredoxin M-type, chloroplast precursor
           (TRX-M) {Pisum sativum}; contains Pfam profile PF00085:
           Thioredoxin
          Length = 313

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
 Frame = -2

Query: 466 VLKPNVPSCRIR-------HEG*SSAGPKWPVRGSQG 377
           V   +VPSCR++       HEG   +G  W +R SQG
Sbjct: 38  VSSSSVPSCRVKCNYDASHHEGDVVSGLGWLIRNSQG 74


>At1g50820.1 68414.m05715 hypothetical protein
          Length = 528

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 370 SQELRRRYLRQAIRACLRRWYRQVPPESAQED 275
           S   RR+Y++QA R  +    +QVP ++ ++D
Sbjct: 476 STNKRRKYMKQAHRGTMGLCQKQVPSDNDEDD 507


>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
           finger) family protein similar to SP|O15541 Zinc finger
           protein 183 {Homo sapiens}; contains Pfam profiles
           PF04396: Protein of unknown function, DUF537, PF00097:
           Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
           finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 586

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 378 PCDPRTGHLG-PALLYPSCRIRHEGTFGFSTRTVNQ*NITNENSFRSQN 521
           P + + G +G PALL   CR   +G   FST   ++ +      +R+++
Sbjct: 520 PQEDKCGEMGEPALLCEQCRFTVQGFENFSTHLKSEEHAHESQYYRNED 568


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,213,419
Number of Sequences: 28952
Number of extensions: 228726
Number of successful extensions: 664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)