Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 1.7
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch... 27 2.2
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy... 26 3.0
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 26 3.0
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha... 26 3.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 26 3.0
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 26 3.9
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 26 3.9
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 5.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 5.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 5.2
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 9.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 25 9.0
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 27.1 bits (57), Expect = 1.7
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 14 SCLRIDKNTVSFRILTE-PKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSN 190
S + + NTVSF ++ P N N ++ + P + + L K + E+ + C+N
Sbjct: 735 SSVSLAGNTVSFSPVSHTPINVTNGESQNNSNNDPSANGAARRLH---KAAREICLRCAN 791
Query: 191 CSNVLSDGCVKFDRILELPSANLDMTEWFC 280
+++ D C K + IL P + FC
Sbjct: 792 AISMIVDDCRKHNVILTSPFIASGVYTAFC 821
>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
Yml6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 261
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +2
Query: 326 VIKQNKLDFLYRLTYFVIDRSILSEKSNKFN-----SKREVYHCS 445
V+KQ+KL Y FV++ + ++S K N S++ YHCS
Sbjct: 148 VLKQHKLGHEYGKALFVLNDNYFEDESLKNNNLLLASRQLGYHCS 192
>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +2
Query: 44 SFRILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIK--ISEELKIVC-SNCSNVLSDG 214
S ++ E N G T+ ++ KP ++ +N ++ +S+ L+ +N + DG
Sbjct: 3 SHELIEESNNSGTPATK--SSSKPTKKIRPRNDLVHYSKALSKVLRHTAKANGLQIREDG 60
Query: 215 CVKFDRILELP 247
++ D IL+LP
Sbjct: 61 YIEVDSILKLP 71
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 182 CSNCSNVLSDGCVKFDRILELPSANLDMTE 271
C C+N+L K DR+L L N D +E
Sbjct: 7 CIECNNMLYPREDKVDRVLRLACRNCDYSE 36
>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 535
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 23 RIDKNTVSFRILTEPKNGGNFYTELLT 103
R +N + FRIL P+ +FYT LL+
Sbjct: 172 RSPENLLPFRILDAPELRDDFYTSLLS 198
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 264 MSKLAEGNSKILSNLTQPSDKTFEQFEQ 181
+ KLA+ IL + QPS F+QF++
Sbjct: 1066 LRKLADAGQAILCTIHQPSAVLFDQFDR 1093
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.8 bits (54), Expect = 3.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 267 VMSKLAEGNSKILSNLTQPSDKTFEQFE 184
++ KLA IL +++QPS + E F+
Sbjct: 941 ILQKLARSGLSILCSVSQPSSRILELFD 968
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 459 QAKQRLQWYTSLLELNLFDFSDKIDRSITKYVNRYRKSNLFCF-ITTSASF-PW 304
Q K+ + + S+L+ + S I S+ YVN+ ++ CF I + SF PW
Sbjct: 340 QFKEFYELWNSILQNHFIISSRNIIDSLGLYVNKIKEKLQICFEIPPTNSFDPW 393
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 94 ITNHWKA*KFCEETESKNQYKNQ*RIENCLLKLFKCFI*WLCQ 222
ITNH K E ES + K++ + ++ L KL + + WL Q
Sbjct: 207 ITNHPKRLPNAEHLESSTKTKDESQDKDKLTKLDRAKLEWLIQ 249
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 366 HISLLIDQSYQRNRTNLILKGRYTIAAAVWLGSVSKSKTLSDFTILKLKY 515
H SLL + S + NLIL RY + +++L K T L L Y
Sbjct: 2624 HSSLLAEDS--STKMNLILLQRYAVIISIFLDQGKCEKANDLITKLSLPY 2671
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -3
Query: 405 DFSDKIDRSITKYVNRYRKSNL-FCFITTSASFPWPC 298
DF+ + +++ +Y+N RK N+ F F T FP C
Sbjct: 610 DFTSQTVQNLQEYLNEKRKLNVNFQFQTPLLIFPEDC 646
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 116 QAFQWLVILYKNYH 75
QAF LV L+KNYH
Sbjct: 720 QAFALLVFLFKNYH 733
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 399 SDKIDRSITKYVNRYRKSNLFCFITTSASF 310
+ KIDR + K+ RY K N F ++
Sbjct: 805 AQKIDRIMLKFSERYMKENPSAFANADTAY 834
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 429 SLLELNLFDFSDKIDRSITKYVNR 358
S++ L+ SDK+ ++++K +NR
Sbjct: 563 SVIAFGLYHISDKVRKAVSKLLNR 586
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,094
Number of Sequences: 5004
Number of extensions: 39476
Number of successful extensions: 133
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -