Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0473 + 19474784-19474792,19475707-19476519,19476892-194769...    30   1.3  
12_02_0223 + 15868889-15869182                                         29   3.0  
11_06_0701 + 26407055-26407597,26407794-26409644                       28   5.2  
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750...    27   6.9  
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435...    27   9.1  
06_03_1336 - 29424470-29424897,29425243-29429653                       27   9.1  
03_04_0018 - 16484109-16484300,16484575-16484656,16484746-164848...    27   9.1  

>12_02_0473 +
           19474784-19474792,19475707-19476519,19476892-19476963,
           19478379-19478594
          Length = 369

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 95  LLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCVKFDRILELPSANLD 262
           ++    PEN        +  ++SEE  +V S+C   + +  V  D + EL  AN+D
Sbjct: 154 IVAISAPENEATTPTSDLVARVSEE--VVGSSCDGEMQETAVVDDTMRELSDANMD 207


>12_02_0223 + 15868889-15869182
          Length = 97

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 173 KIVCSNCSNVLSDGCVKFDRILELPSANLD 262
           K+ CSNC ++ +  CV  D I +L +   D
Sbjct: 37  KMFCSNCDDICNASCVNSDTIAKLCAPQCD 66


>11_06_0701 + 26407055-26407597,26407794-26409644
          Length = 797

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = -1

Query: 323 HLPHFHGRVHDCVHDRTILSCPN*LKAILKSCQI*HNHQIKHLNSLSKQFSILH 162
           HL H H  + D   DRT +SC       LK+ Q+ H H+ K L+SL    + L+
Sbjct: 447 HLIHLH--LLDL--DRTCISCLPESIGALKNLQMLHLHRCKSLHSLPTAITQLY 496


>07_03_1424 - 26474464-26474514,26474549-26474635,26474905-26475006,
            26475149-26475260,26475405-26475463,26475559-26475633,
            26475734-26475832,26476128-26476343,26476426-26476500,
            26476583-26476670,26476757-26476902,26477240-26477347,
            26477417-26478436,26478437-26478715,26479471-26480520,
            26480636-26480692,26480780-26480837,26481379-26481458,
            26481598-26481654,26481764-26481833,26481967-26482202,
            26482341-26482445,26482534-26482680,26482758-26482823,
            26482916-26482979,26484040-26484200,26484308-26484400,
            26484487-26484600,26484684-26484803,26484893-26484976,
            26485061-26485216,26485389-26485811
          Length = 1885

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 119  NSVKKQNLKINIKISEELK-IVCSNCSNVLSDGCVKFDRILELPSANLDMTEW 274
            NS K Q + +  +  EEL+ ++C   S + +   +  D I EL    LDMT +
Sbjct: 1671 NSEKDQEISVARQRIEELEGLICMLTSRLAAVDSMTHDIIRELLGVKLDMTNY 1723


>11_06_0066 -
           19741883-19742263,19743001-19743231,19743378-19743530,
           19743667-19743726,19743806-19743874,19744639-19744719,
           19744818-19744920,19745392-19745534,19745621-19745683,
           19745803-19745870,19745974-19746055,19746147-19746260,
           19746362-19746570,19746647-19746818
          Length = 642

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 50  RILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNV 202
           RIL +P  GGN  T ++ T  PE  +  +  +  ++ +   K V SNC+ V
Sbjct: 296 RIL-QPALGGNAKTSIICTAAPE-EIHVEETRGTLQFASRAKCV-SNCAQV 343


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 5   NSMSCLRIDKNTVSFRILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIK-ISEELKIV 181
           N      ID ++ +  +  + K  G+   + + T  P+    + +L    K ISE+LK+V
Sbjct: 165 NDTGSTDIDHSSTATHMPRKEKQWGSQREDTMKT--PKLKFDRVDLSTRTKHISEQLKLV 222

Query: 182 CSNCSNVLS 208
           C+  S +L+
Sbjct: 223 CAKVSTILN 231


>03_04_0018 -
           16484109-16484300,16484575-16484656,16484746-16484856,
           16484937-16485188,16485274-16485677,16486035-16486952,
           16486990-16487475,16487566-16487763
          Length = 880

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 KLFAQTVQMFYLMVVSNLTGF 236
           K++AQ  + FYL+   NLT F
Sbjct: 385 KIYAQVKEHFYLLAAENLTAF 405


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,171,663
Number of Sequences: 37544
Number of extensions: 212487
Number of successful extensions: 524
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)