Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307D02f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9) 37 0.012
SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45) 32 0.33
SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46392| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_17209| Best HMM Match : PHD (HMM E-Value=0.0041) 29 2.3
SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69) 29 3.1
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7) 28 5.4
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34) 27 7.1
SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0) 27 7.1
SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 27 9.4
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 27 9.4
SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05) 27 9.4
SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_49308| Best HMM Match : Ribosomal_S27e (HMM E-Value=5.9)
Length = 379
Score = 36.7 bits (81), Expect = 0.012
Identities = 27/99 (27%), Positives = 39/99 (39%)
Frame = +2
Query: 170 LKIVCSNCSNVLSDGCVKFDRILELPSANLDMTEWFCXXXXXXXXXXNEADVVIKQNKLD 349
L + C C N + V+F R+L+LPS + E +EA + ++ D
Sbjct: 135 LNLTCRTCENPILS-TVRFSRVLDLPS---ESWEQLSKDLCCHGTSLSEAYTSLNPSQDD 190
Query: 350 FLYRLTYFVIDRSILSEKSNKFNSKREVYHCSRCLAWLG 466
L Y V+ S L EK+ C RC LG
Sbjct: 191 CLLGSYYIVVHPSSLEEKNIIIKQGETTIDCGRCRKSLG 229
>SB_31932| Best HMM Match : DUF229 (HMM E-Value=1.4013e-45)
Length = 572
Score = 31.9 bits (69), Expect = 0.33
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 383 RSILSEKSNKFNSKREVYHCSRCLAWLGLKIKDTV 487
R + +EK KF + +HC C A G K KDT+
Sbjct: 359 REMPNEKLQKFKMSYQDHHCDSCGAMFGEKAKDTM 393
>SB_18513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4634
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -3
Query: 468 RPSQAKQRLQWYTSLLELNLFDFSDKIDRSITKYVNRYRKSNLFCFITTS 319
RP+ ++QRLQ T +++FD RS TKYV + S L C + S
Sbjct: 4583 RPTASEQRLQEITKATLMDIFDELLDPARSDTKYV--FLLSVLLCLVHIS 4630
>SB_46392| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 380 DRSILSEKSNKFNSKREVYHCSRCLAWLGL 469
D +L + ++ S R + CS CL W+ L
Sbjct: 233 DERLLDDVDEEYESGRPMIECSECLTWIHL 262
>SB_17209| Best HMM Match : PHD (HMM E-Value=0.0041)
Length = 109
Score = 29.1 bits (62), Expect = 2.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 380 DRSILSEKSNKFNSKREVYHCSRCLAWLGL 469
D +L + ++ S R + CS CL W+ L
Sbjct: 37 DERLLDDVDEEYESGRPMIECSECLTWIHL 66
>SB_47174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 61 RTKEWW*FLYRITNHWKA*KFCEETESKNQYKNQ 162
R + WW +Y+ T+HW K C + + KNQ
Sbjct: 759 RLRYWWKGMYQDTDHWC--KSCTDCSMRKSPKNQ 790
>SB_11082| Best HMM Match : RnaseH (HMM E-Value=0.69)
Length = 619
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 56 LTEPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLS 208
L + + G + L + KPE S +L I+ S++ KI+ S CS LS
Sbjct: 200 LVKQRYGTELRSRTLASIKPEISQALSSLLEEIRTSDDAKILRSACSTFLS 250
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 344 LDFLYRLTYFVIDRSILSEKSNKFNSKREVYHC 442
+DFLYRL +D L + ++F S R V +C
Sbjct: 774 IDFLYRLPVIRVDWRSLKRQCHRFTSGRLVDNC 806
>SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7)
Length = 159
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 386 SILSEKSNKFNSKREVYHCSRC 451
SIL EK+ F ++R+ YH S+C
Sbjct: 83 SILGEKTEGFCARRQCYHNSQC 104
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 329 IKQNKLDFLYRLTYFVIDRSILSEKSNKFNSKREV 433
+K K+ F++ T+F +D+ + E+ + F S REV
Sbjct: 1253 LKNCKMAFIFFNTFFNLDKYLEFEQRDPFGSAREV 1287
>SB_12727| Best HMM Match : zf-CHY (HMM E-Value=3.7e-34)
Length = 168
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 410 KFNSKREVYHCSRCLAWLGLKIKDT 484
+ ++ YHC RC LG+ +KD+
Sbjct: 97 RIGGRKNFYHCPRCDICLGVGLKDS 121
>SB_43428| Best HMM Match : Glyco_hydro_47 (HMM E-Value=0)
Length = 758
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 410 KFNSKREVYHCSRCLAWLGLKIKDT 484
+ ++ YHC RC LG+ +KD+
Sbjct: 97 RIGGRKNFYHCPRCDICLGVGLKDS 121
>SB_59028| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 395 SEKSNKFNSKREVYHCSRCLAWLG 466
+E+ + F +K+E +HC+ CL LG
Sbjct: 103 TERFDFFETKKEEFHCAICLDVLG 126
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 27.1 bits (57), Expect = 9.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 20 LRIDKNTVSFRILTE-PKNGGNFYTELLTTGKPENSVKK---QNLKINIKISEELKIVCS 187
L+ + S I TE P G N G P + V K Q LKIN K+ + +K + +
Sbjct: 1200 LKSSPDVKSVGINTEVPFQGDNRTDSTNEKGTPRDDVDKRLQQQLKINTKLKQMVKHLKA 1259
Query: 188 NCSNVLSDG 214
+ +++ DG
Sbjct: 1260 DVTSLKEDG 1268
>SB_29995| Best HMM Match : zf-C3HC4 (HMM E-Value=1.4e-05)
Length = 362
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 395 SEKSNKFNSKREVYHCSRCLAWLG 466
+E+ + F +K+E +HC+ CL LG
Sbjct: 103 TERFDFFETKKEEFHCAICLDVLG 126
>SB_47160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1806
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 347 DFLYRLTYFVIDRSILSEKSNKFNSKREVYHCSRCLAWLGLKIKD 481
+F + +T ++ +++ F + E+Y C C LGL+ KD
Sbjct: 898 NFRFNVTTRYVELTVVRFSGESFRLQLELYGCRVCERALGLESKD 942
>SB_40913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 11 MSCLRIDKNTVSFRILTEPKNGGNFYTELLTTGKPENSVK 130
+ CL+ +K+ VS + G F+ ELL+ K +SVK
Sbjct: 239 LKCLK-EKSCVSINFASSANPTGEFWCELLSDDKYNSSVK 277
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,487,406
Number of Sequences: 59808
Number of extensions: 270074
Number of successful extensions: 660
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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