Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical pr...    32   0.22 
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2 prot...    29   2.7  
AF125960-1|AAD14735.1|  356|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL021474-6|CAI79259.1|  261|Caenorhabditis elegans Hypothetical ...    28   3.5  
AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type tran...    28   3.5  
AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like tran...    28   3.5  
Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U80839-9|AAB37922.2|  302|Caenorhabditis elegans Hypothetical
           protein ZC204.7 protein.
          Length = 302

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 119 NSVKKQNLK-INIKISEELKIVCSNCSNVLSDGCVKFDRILELPSANLDMTEW 274
           NSV  QN K +N+      KI+CSN SN++ D     D +L     NL M  W
Sbjct: 181 NSVHIQNFKKLNLPAMTLHKILCSNSSNIIVD-----DSLLSNKDLNLLMKHW 228


>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 53   ILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVL 205
            IL EP      Y ++  T + ENS+K+ +L I   ++ ELKI   +C + +
Sbjct: 1024 ILNEPIQVAAVYLKIAFTWQMENSMKQNSLTI---LASELKICIRDCQHAV 1071


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 53   ILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVL 205
            IL EP      Y ++  T + ENS+K+ +L I   ++ ELKI   +C + +
Sbjct: 1024 ILNEPIQVAAVYLKIAFTWQMENSMKQNSLTI---LASELKICIRDCQHAV 1071


>Z77655-6|CAB01139.1|  351|Caenorhabditis elegans Hypothetical
           protein C56A3.7 protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 413 FNSKREVYHCSRCLAWLGLKIKDTVRLYNSEV 508
           FN   E YH   C+  L  KI + VR+Y+ ++
Sbjct: 231 FNEPSEQYHSIACVWTLSFKIFEIVRIYSYKI 262


>U75587-1|AAB48299.1|  351|Caenorhabditis elegans caveolin-2
           protein.
          Length = 351

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 413 FNSKREVYHCSRCLAWLGLKIKDTVRLYNSEV 508
           FN   E YH   C+  L  KI + VR+Y+ ++
Sbjct: 231 FNEPSEQYHSIACVWTLSFKIFEIVRIYSYKI 262


>AF125960-1|AAD14735.1|  356|Caenorhabditis elegans Hypothetical
           protein T12B3.3 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -3

Query: 411 LFDFSDKIDRSITKYVNRYRKSNLFCFITTSASFPWPCP*LCP*QNHSVMSKLAEGNSKI 232
           LFD  D  +  + +  N ++K NL+      + FPW            V+ ++ +G+ KI
Sbjct: 178 LFDVKDSDNELVDQIANLFQKYNLYDKAIVCSFFPW------------VVYRIKKGDQKI 225

Query: 231 LSNLT 217
           L+ LT
Sbjct: 226 LTGLT 230


>Z48783-2|CAC42295.1|  805|Caenorhabditis elegans Hypothetical
           protein F33H1.1b protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 89  TELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCV 220
           T   ++G P   ++ +++K NIK+ ++   V   CSN L+DG V
Sbjct: 97  TRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSN-LNDGTV 139


>Z48783-1|CAA88701.1|  780|Caenorhabditis elegans Hypothetical
           protein F33H1.1a protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 89  TELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCV 220
           T   ++G P   ++ +++K NIK+ ++   V   CSN L+DG V
Sbjct: 97  TRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSN-LNDGTV 139


>AL021474-6|CAI79259.1|  261|Caenorhabditis elegans Hypothetical
           protein Y32F6A.6 protein.
          Length = 261

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 429 SLLELNLFDFSDKIDRSITKYVNRYRKSNLFCFITTSASFPWPCP*LC 286
           S+  +NL DF D ++  IT  V   ++S L  + +    F  P   LC
Sbjct: 173 SMCNINLNDFQDLVEELITTLVYSIKRSFLIKYRSVEIDFTPPFKRLC 220


>AF233652-1|AAF63475.1|  780|Caenorhabditis elegans RFX-type
           transcription factor DAF-19 short variant protein.
          Length = 780

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 89  TELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCV 220
           T   ++G P   ++ +++K NIK+ ++   V   CSN L+DG V
Sbjct: 97  TRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSN-LNDGTV 139


>AF226156-1|AAF61564.1|  805|Caenorhabditis elegans RFX-like
           transcription factor DAF-19 protein.
          Length = 805

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +2

Query: 89  TELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCV 220
           T   ++G P   ++ +++K NIK+ ++   V   CSN L+DG V
Sbjct: 97  TRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSN-LNDGTV 139


>Z30423-3|CAA83005.2|  456|Caenorhabditis elegans Hypothetical
           protein T20G5.4 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 14  SCLRIDKNTVSFRILTEPKNGGNFYTELLTTGKPENS 124
           S L + K+  S R L   ++ G+F  E LT G P N+
Sbjct: 408 SLLNLMKHASSSRSLERQRSPGSFRMETLTPGSPTNT 444


>Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical
           protein C34D1.2 protein.
          Length = 114

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/43 (23%), Positives = 23/43 (53%)
 Frame = +2

Query: 326 VIKQNKLDFLYRLTYFVIDRSILSEKSNKFNSKREVYHCSRCL 454
           V++Q+ L  +     + + R   +    ++  K+++Y+C RCL
Sbjct: 5   VLRQSVLVPISMYPQYPVPRRYTTSVFKEYQKKKKIYYCQRCL 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,325,969
Number of Sequences: 27780
Number of extensions: 220319
Number of successful extensions: 639
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)