Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307D02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low simi...    30   1.1  
At1g50870.1 68414.m05720 F-box family protein contains Pfam PF00...    29   1.9  
At1g29370.1 68414.m03591 kinase-related similar to putative prot...    28   3.3  
At3g43250.1 68416.m04565 cell cycle control protein-related cont...    27   5.8  
At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family pr...    27   5.8  
At1g29350.1 68414.m03588 expressed protein                             27   5.8  
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans...    27   7.7  
At3g53680.1 68416.m05928 PHD finger transcription factor, putati...    27   7.7  

>At3g16565.1 68416.m02118 alanyl-tRNA synthetase-related low
           similarity to SP|Q56273 Alanyl-tRNA synthetase (EC
           6.1.1.7) (Alanine--tRNA ligase) (AlaRS) {Thiobacillus
           ferrooxidans}
          Length = 271

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 392 LSEKSNKFNSKREVYHCSRCLAWLGL-KIKD 481
           + E   K NS++ V  CS C AW G  KI D
Sbjct: 98  VDESRRKLNSRQAVEDCSHCYAWHGWNKISD 128


>At1g50870.1 68414.m05720 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain; similar to Probable
           disease resistance RPP8-like protein 2
           (Swiss-Prot:Q9MAG6) [Arabidopsis thaliana]
          Length = 396

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +2

Query: 41  VSFRILTEPKNGGNFYTELLTTGKPENSVKKQNLKINI-KISEELKIVCSNCSNVLSDGC 217
           +SFRI T+P        + L   KPE S K  ++ +    +  + K++C N  N  SD C
Sbjct: 136 ISFRISTKPIIWNPTMRQFLILPKPEKSWKGLSVFLGYDPVEGKHKLMCMNRDNT-SDEC 194

Query: 218 VKFDRILELPSA 253
               R+L L SA
Sbjct: 195 ----RVLTLGSA 202


>At1g29370.1 68414.m03591 kinase-related similar to putative protein
           kinase (GI:11125348) [Homo sapiens]; similar to Paired
           box protein Pax-8 (Swiss-Prot:P47240) [Canis familiaris]
          Length = 831

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  GGNFYTELLTTGKPENSVKKQNLKINIKISEELKI 178
           G     E++  G+P+N   KQN+ +  +I+ E K+
Sbjct: 189 GQRSMAEVVKMGRPQNKTTKQNVNMGSEINHEHKV 223


>At3g43250.1 68416.m04565 cell cycle control protein-related
           contains similarity to Swiss-Prot:Q9P7C5 cell cycle
           control protein cwf16 [Schizosaccharomyces pombe]
          Length = 249

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 62  EPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDGCVKFD 229
           E KN   +Y       K     K +N +  I+    +++ C+ C N +S+G  KF+
Sbjct: 3   ERKNLNKYYPPDFDPKKIHRIKKPKNQQKKIRFMLPVRVRCNTCGNYMSEG-TKFN 57


>At3g26600.1 68416.m03320 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 615

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/68 (26%), Positives = 33/68 (48%)
 Frame = +2

Query: 29  DKNTVSFRILTEPKNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLS 208
           D ++  +R L   K+  N Y ++  +G    + KK+    N ++  ELK+ C+    +L+
Sbjct: 321 DPSSKLYRPLKSSKS--NVYRDIGGSGSRTGNFKKERDNENPEVKHELKVNCAEALWMLA 378

Query: 209 DGCVKFDR 232
            G V   R
Sbjct: 379 RGNVANSR 386


>At1g29350.1 68414.m03588 expressed protein
          Length = 831

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 74  GGNFYTELLTTGKPENSVKKQNLKINIKISEELKI 178
           G     E++  G+P+N   KQN+ +  +I+ E ++
Sbjct: 189 GQRSMAEVVKMGRPQNKTTKQNVNVGSEINHEHEV 223


>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
           transcription factor DEFH125 - Antirrhinum majus,
           PIR:T17029; contains Pfam domain PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); contains Pfam domain PF01486: K-box region
          Length = 240

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +2

Query: 68  KNGGNFYTELLTTGKPENSVKKQNLKINIKISEELKIVCSNCSNVLSDG 214
           + G   + E L   K  N + +QN++++ K+SE   +  +N +++L++G
Sbjct: 154 REGNLVHQENLDLHKKVNLMHQQNMELHEKVSEVEGVKIANKNSLLTNG 202


>At3g53680.1 68416.m05928 PHD finger transcription factor, putative
           predicted proteins, Arabidopsis thaliana
          Length = 839

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +2

Query: 155 KISEELKIVCSNCSNVLSDGCVKFDRILELPSANLDMTEWFC 280
           K  +   I+C  C      GC++ + + +L     D  +WFC
Sbjct: 576 KFDDRTVILCDQCEKEYHVGCLRENELCDLKGIPQD--KWFC 615


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,389,056
Number of Sequences: 28952
Number of extensions: 192893
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)