Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C12f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21; M...    37   0.24 
UniRef50_Q9LM79 Cluster: F2D10.24; n=2; Arabidopsis thaliana|Rep...    33   3.0  
UniRef50_Q7REU3 Cluster: Unnamed protein product-related; n=9; P...    33   4.0  
UniRef50_A7NAU7 Cluster: ATP-dependent helicase HrpA; n=9; Franc...    33   5.2  
UniRef50_A5K817 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase...    33   5.2  
UniRef50_Q8D281 Cluster: Undecaprenyl-diphosphatase; n=1; Wiggle...    33   5.2  
UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1; ...    32   6.9  
UniRef50_A0D074 Cluster: Chromosome undetermined scaffold_33, wh...    32   6.9  
UniRef50_Q4DVM3 Cluster: Putative uncharacterized protein; n=2; ...    32   9.2  

>UniRef50_Q2MI42 Cluster: Putative membrane protein ycf1; n=21;
           Magnoliophyta|Rep: Putative membrane protein ycf1 -
           Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
          Length = 1891

 Score = 37.1 bits (82), Expect = 0.24
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 305 SYIINYNKGTF*NCLAMLSDVPQKNNA--LFFKKKEKSSILFDFGNINVSFRDLNEEEFK 478
           SY+ N N G   NC   L D   +N    LF+ +K   S+LFD+   N  FR +    F+
Sbjct: 347 SYLNNNNTGNLENCKLQLLDKKNENQEQDLFWFQKPLVSLLFDYNRWNRPFRYIKNNRFE 406

Query: 479 R 481
           +
Sbjct: 407 Q 407


>UniRef50_Q9LM79 Cluster: F2D10.24; n=2; Arabidopsis thaliana|Rep:
           F2D10.24 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1119

 Score = 33.5 bits (73), Expect = 3.0
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 134 SVFFFICMDKSEFSHKYF-WFNHRFYCFLSLAYRSHYAHRKGRLDKNIY*NSHGLSIQSY 310
           S F  +C  K  + H+   WF  +FY FLS+  +  Y +   +  KN+   S     Q+Y
Sbjct: 573 SAFLAVCRGKGPYEHQSMTWFVFKFYMFLSVELKRKY-NDTNKSSKNLLGGSEWYCQQAY 631


>UniRef50_Q7REU3 Cluster: Unnamed protein product-related; n=9;
           Plasmodium (Vinckeia)|Rep: Unnamed protein
           product-related - Plasmodium yoelii yoelii
          Length = 1011

 Score = 33.1 bits (72), Expect = 4.0
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = +2

Query: 260 LDKNIY*NSHGLSIQSYIINYNKGTF*NCLAMLSDVPQKNNALFFKKKEKSSILFDFGNI 439
           ++ ++Y N +G  I + I+N         L +  D+P+     +F K  K SI+FD    
Sbjct: 185 INVDMYKNKYGEEIYNEIVN---------LYVKRDIPKNYEQKYFFKNVKKSIIFDIDKY 235

Query: 440 N-VSFRDLNEEEFKRHDIIFKTYSYSF 517
           N   F    +EEF  + ++  T +  +
Sbjct: 236 NDEEFEKKIQEEFTNNGVLINTINKKY 262


>UniRef50_A7NAU7 Cluster: ATP-dependent helicase HrpA; n=9;
            Francisella tularensis|Rep: ATP-dependent helicase HrpA -
            Francisella tularensis subsp. holarctica FTA
          Length = 1444

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 347  LAMLSDVPQKNNALFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHD 487
            L+   DV   +    FKK+  S   ++ GN+ V+ R+  +  F RHD
Sbjct: 1161 LSFFDDVISSDLFTEFKKQNSSRNYYENGNLTVNLRNQRDNRFDRHD 1207


>UniRef50_A5K817 Cluster: 1-deoxy-D-xylulose 5-phosphate synthase,
           putative; n=3; Plasmodium|Rep: 1-deoxy-D-xylulose
           5-phosphate synthase, putative - Plasmodium vivax
          Length = 1111

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 362 DVPQKNNALFFKKKEKSSILFDFGNINVS-FRDLNEEEFKRHDIIFKTYSYSF 517
           DVP+    LFF +  + S+  D    +   F  L  EEF+R+ ++ K  S  +
Sbjct: 289 DVPENYEELFFTEPTEKSVALDVDKYDEDHFEKLMREEFQRNGVLIKNISKEY 341


>UniRef50_Q8D281 Cluster: Undecaprenyl-diphosphatase; n=1;
           Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis|Rep: Undecaprenyl-diphosphatase -
           Wigglesworthia glossinidia brevipalpis
          Length = 267

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 281 NSHGLSIQSYIINYNKGTF*NCLAMLSDVPQKNNALFFKKKEKSSILFDFGNIN 442
           N H L + +YI N +K    N + ++   P  +  L FK+K K SI F + NIN
Sbjct: 25  NGH-LILINYIFNIDKENIQNIIKIIQIGPIFSIILLFKEKIKKSITFFYFNIN 77


>UniRef50_Q8ILC9 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 230  DMQGLRNNKTCG*TKNIYERIHFYPYK*KKIQNKEKSETLRDI 102
            +M  + NN       NIY+++ F+ +K KK  NKEK E   ++
Sbjct: 4928 NMNNMNNNYNVSSCNNIYKKV-FFNFKRKKSDNKEKEEEEEEV 4969


>UniRef50_A0D074 Cluster: Chromosome undetermined scaffold_33, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_33,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 663

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 462 FRSRNETLMLPKSNKIELFSFFLKNNALFFCGTSESIAKQF 340
           F S+NE L+L K   +E+F+  +K    FF    E I  QF
Sbjct: 30  FNSKNEMLLLEKDTSMEVFAVSVKQEYDFFFDGEEGIQFQF 70


>UniRef50_Q4DVM3 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 224

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 104 CLLMFHFFPYSVFFFICMDKSEFSHKYFWFNHRFY 208
           C L  HF  YS FFF   +   FS  +F+F  R +
Sbjct: 13  CRLAIHFCSYSFFFFFFCNLLFFSFSFFFFARRSF 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,109,024
Number of Sequences: 1657284
Number of extensions: 8914556
Number of successful extensions: 19008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18993
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)