Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    27   1.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   3.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   5.2  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   6.8  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.0  
SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    25   9.0  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 386 LFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHDII 493
           LF KK E+ +I+FDF   N    DL  +E KR  ++
Sbjct: 222 LFIKKLEQCNIIFDF---NDPSSDLASKEIKREALL 254


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 436  VTKVK*NRTFLFFLEKQCIIFLRDVRKHS 350
            V +V+  R F +++ ++ I+FLRD+ K +
Sbjct: 1864 VHEVERVRGFAYYMSQKAIVFLRDLEKRT 1892


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +2

Query: 119 HFFPYSVFFFICMDKSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLD 265
           H  P+    F   D+   SH+Y +  +     L   Y+S Y + K R D
Sbjct: 485 HRAPHLALHFRNTDRRMNSHRYPFLYYPEVYILHGGYKSFYENHKNRCD 533


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 293 DHDCFNRCSYLNVPSYAHSGTDMQGLR 213
           D D  N  S+L+   Y H   D+ GLR
Sbjct: 447 DVDLLNLLSFLHALQYVHDVRDLLGLR 473


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 122 FFPYSVFFFICM 157
           FF +S+FFF+CM
Sbjct: 358 FFIFSLFFFLCM 369


>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 395 KKKEKSSILFDFGNINVSFRDLNEEEF 475
           +K    ++  DFGN+N S   +N EEF
Sbjct: 91  RKSGGGTVFHDFGNLNYSVL-MNREEF 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,109,406
Number of Sequences: 5004
Number of extensions: 43695
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)