Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C12f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical pr...    27   6.2  
M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein ( C.ele...    27   6.2  
L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein pr...    27   6.2  
AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical ...    27   6.2  
AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine r...    27   8.1  

>Z81054-5|CAE17755.1|  313|Caenorhabditis elegans Hypothetical
           protein F01D4.6b protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 161 KSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKNI 274
           +S  + K FW N R YC     Y+ H  HR     K +
Sbjct: 52  ESPLAEKCFWKNGRIYCSQHY-YKDHSIHRCAGCKKGV 88


>Z81054-4|CAB02885.3|  321|Caenorhabditis elegans Hypothetical
           protein F01D4.6a protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 161 KSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKNI 274
           +S  + K FW N R YC     Y+ H  HR     K +
Sbjct: 60  ESPLAEKCFWKNGRIYCSQHY-YKDHSIHRCAGCKKGV 96


>Z74027-4|CAA98423.1|  561|Caenorhabditis elegans Hypothetical
           protein C13G3.3b protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 368 PQKNNALFFKKKEKSSILFDFGNINVSFRDLNEEEFKR 481
           P +   LF +K  +  ++FDF N  +S  DL  +E KR
Sbjct: 59  PSERETLFIQKLRQCCVVFDFANDALS--DLKFKEVKR 94


>Z74027-3|CAA98422.1|  557|Caenorhabditis elegans Hypothetical
           protein C13G3.3a protein.
          Length = 557

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 368 PQKNNALFFKKKEKSSILFDFGNINVSFRDLNEEEFKR 481
           P +   LF +K  +  ++FDF N  +S  DL  +E KR
Sbjct: 55  PSERETLFIQKLRQCCVVFDFANDALS--DLKFKEVKR 90


>M20244-1|AAA28108.1|  313|Caenorhabditis elegans protein (
           C.elegans mec-3 geneencoding differentiation of the six
           touch receptor neurons,complete cds. ).
          Length = 313

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 161 KSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKNI 274
           +S  + K FW N R YC     Y+ H  HR     K +
Sbjct: 52  ESPLAEKCFWKNGRIYCSQHY-YKDHSIHRCAGCKKGV 88


>L02877-1|AAA50614.1|  321|Caenorhabditis elegans homeoprotein
           protein.
          Length = 321

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 161 KSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKNI 274
           +S  + K FW N R YC     Y+ H  HR     K +
Sbjct: 60  ESPLAEKCFWKNGRIYCSQHY-YKDHSIHRCAGCKKGV 96


>AL110500-6|CAB60429.1|  629|Caenorhabditis elegans Hypothetical
           protein Y87G2A.6 protein.
          Length = 629

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 371 QKNNALFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHDII 493
           +KN    F   E  ++  D GN +VS RD+  E  K+ D++
Sbjct: 420 RKNRFYLFTNTEPYNVEDDEGNPSVSGRDVFNERPKKEDLL 460


>AF106575-14|AAC78163.2|  365|Caenorhabditis elegans Serpentine
           receptor, class w protein98 protein.
          Length = 365

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = +3

Query: 390 FSRKKRKVRFYLT---LVTSMFHFVI*TRRNL 476
           F+R   K+++YL+   +V ++ HF+I TRR +
Sbjct: 34  FARPSLKLQYYLSFFGIVLTILHFIILTRRTM 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,098
Number of Sequences: 27780
Number of extensions: 231887
Number of successful extensions: 504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)