Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C12f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10990.2 68414.m01262 expressed protein  and genscan                30   0.82 
At1g12490.1 68414.m01445 F-box family protein-related contains w...    28   4.4  
At5g45540.1 68418.m05593 expressed protein contains Pfam domain,...    27   7.7  
At4g19970.1 68417.m02924 expressed protein similar to GI:2827651...    27   7.7  
At1g26330.1 68414.m03211 hypothetical protein                          27   7.7  
At1g13410.1 68414.m01564 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At1g10990.2 68414.m01262 expressed protein  and genscan
          Length = 192

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 107 LLMFHFFPYSVFFFICMDKSEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKN 271
           L+M  F   + F  I + + EF   YFW N  F   + L    +  +RKG    N
Sbjct: 19  LVMPGFIAGATFLVIWIIRREFLLSYFWCNIDFLASVYLLNNPYIGYRKGSTKTN 73


>At1g12490.1 68414.m01445 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain
          Length = 352

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 383 ALFFKKKEKSSILFDFGNINVSFRDLNEEEFKRHDIIFKTYSYSF 517
           ALF++KK+K  +LF +  +      + + E + +D+ F  YS  +
Sbjct: 297 ALFYEKKKKKKLLF-YCRVRSRTLMVYDPETESYDVAFNDYSIGY 340


>At5g45540.1 68418.m05593 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594; expression
           supported by MPSS
          Length = 803

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 164 SEFSHKYFWFNHRFYCFLSLAYRSHYAHRKGRLDKNIY*NSHGLSIQSYIINYNKGT--F 337
           SE+ H Y   N   +C      R HY   KG++    +   H LSI + I N  +GT  F
Sbjct: 414 SEYVHAY---NLIGFCLGIRPKRIHYT--KGKIHSFFHQTVHILSIDTAIENATRGTRQF 468

Query: 338 *NCLA-MLSDVPQKNNAL 388
            N +   LS++ +++N++
Sbjct: 469 HNWIGRFLSNLSKRDNSV 486


>At4g19970.1 68417.m02924 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853,
           GI:10764852 from [Arabidopsis thaliana]; predicted
           protein PATCHX:E326963
          Length = 715

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -1

Query: 305 IECLDHDCFNRCSYLNVPSY--AHSGTDMQGLRNNKTCG*TKNIYERI 168
           + CLD   F RCS L+   Y    +GTD  G +   T    K ++ RI
Sbjct: 494 VVCLDSKAFARCSQLHPNCYYLKTTGTDFSGEKLFATPDYLKMMWRRI 541


>At1g26330.1 68414.m03211 hypothetical protein
          Length = 1196

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 155 MDKSEFSHKYFWFNHRFYCFL-SLAYRSHYAHRKGRLDKNIY*NSHGL 295
           + K++FSH   W   RF C +  + +         RL + +  NSHG+
Sbjct: 94  LQKTDFSHLKIWHGKRFTCKMGGMEFFGFKNPLVQRLLRELVTNSHGM 141


>At1g13410.1 68414.m01564 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 4   IFCTMNTMNIGIYSKLIN*YILRKSML 84
           +FC M   N+ +++ +IN Y+L K ++
Sbjct: 87  VFCEMVEKNVVLWTSMINGYLLNKDLV 113


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,165,186
Number of Sequences: 28952
Number of extensions: 196139
Number of successful extensions: 364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)