Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307C07f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 331 2e-91
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 331 2e-91
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 304 2e-83
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 246 4e-69
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 201 3e-52
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 201 3e-52
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 183 6e-47
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 93 1e-19
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 93 1e-19
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 89 2e-18
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 89 2e-18
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 89 2e-18
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 56 2e-08
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 5e-06
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 45 3e-05
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 45 4e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 41 5e-04
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 40 8e-04
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 39 0.002
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 36 0.013
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 34 0.054
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 34 0.054
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.071
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 33 0.094
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.094
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.87
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.5
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.5
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical ... 29 2.7
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 4.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 331 bits (813), Expect = 2e-91
Identities = 155/164 (94%), Positives = 159/164 (96%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 205 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 384
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 385 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 516
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 331 bits (813), Expect = 2e-91
Identities = 155/164 (94%), Positives = 159/164 (96%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 205 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 384
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 385 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 516
GEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSE 164
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 304 bits (747), Expect = 2e-83
Identities = 142/149 (95%), Positives = 146/149 (97%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 205 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 384
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GT
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGT 120
Query: 385 GEFEAGISKNGQTREHALLAFTLGVKQLI 471
GEFEAGISKNGQTREHALLA TLGVKQL+
Sbjct: 121 GEFEAGISKNGQTREHALLAQTLGVKQLV 149
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 246 bits (602), Expect(2) = 4e-69
Identities = 113/117 (96%), Positives = 116/117 (99%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 205 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 375
DKLKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 61 DKLKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 33.1 bits (72), Expect(2) = 4e-69
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 466 LIVGVNKMDSTEPPYSE 516
L+V NKMDSTEPP+SE
Sbjct: 114 LVVACNKMDSTEPPFSE 130
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 201 bits (490), Expect = 3e-52
Identities = 92/156 (58%), Positives = 117/156 (75%)
Frame = +1
Query: 34 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 213
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 214 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 393
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 227 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 286
Query: 394 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 501
E G GQT+EHALL +LGV QLIV VNK+D+ +
Sbjct: 287 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD 322
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 201 bits (490), Expect = 3e-52
Identities = 92/156 (58%), Positives = 117/156 (75%)
Frame = +1
Query: 34 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 213
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 214 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 393
+ ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEF
Sbjct: 245 EEERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEF 304
Query: 394 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 501
E G GQT+EHALL +LGV QLIV VNK+D+ +
Sbjct: 305 ETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD 340
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 183 bits (446), Expect = 6e-47
Identities = 82/163 (50%), Positives = 114/163 (69%)
Frame = +1
Query: 28 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 207
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 208 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 387
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A G
Sbjct: 164 TNDEEREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRG 223
Query: 388 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 516
EFE G + GQTREH++L T GVK L++ VNKMD + E
Sbjct: 224 EFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEE 266
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 204
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 205 DKLKAER 225
DKLK +
Sbjct: 61 DKLKVTK 67
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 92.7 bits (220), Expect = 1e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 37 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 210
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 211 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 390
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 391 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 501
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 92.7 bits (220), Expect = 1e-19
Identities = 61/157 (38%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +1
Query: 37 KTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 210
K ++N+ IGH+D GK+T T + + G K KF++ +DK
Sbjct: 43 KINVNVGTIGHIDHGKTTLTSAITRVQAKKGFAKHI--KFDE---------------IDK 85
Query: 211 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 390
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 86 GKEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGV 145
Query: 391 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 501
E QT+EH +LA +GVK + + +NK D E
Sbjct: 146 ME-------QTKEHLILAKQVGVKNMAIFINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 89.0 bits (211), Expect = 2e-18
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 210
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 89
Query: 211 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 390
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 90 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 149
Query: 391 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 492
QTREH LLA +GV ++V +NK+D
Sbjct: 150 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 178
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 89.0 bits (211), Expect = 2e-18
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 210
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 211 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 390
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 391 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 492
QTREH LLA +GV ++V +NK+D
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 89.0 bits (211), Expect = 2e-18
Identities = 58/156 (37%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Frame = +1
Query: 31 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 210
++K H+N+ IGHVD GK+T T + K+E +D
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYED---------------IDN 90
Query: 211 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 390
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 91 APEEKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGP 150
Query: 391 FEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMD 492
QTREH LLA +GV ++V +NK+D
Sbjct: 151 MP-------QTREHLLLARQVGVPLDNIVVFMNKVD 179
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 59.7 bits (138), Expect = 1e-09
Identities = 47/148 (31%), Positives = 67/148 (45%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
N ++ HVD GKST L+ CG + +K+ +LDKL+ ERE
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPG-----QKQ-------------MLDKLQVERE 85
Query: 229 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 408
RGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 86 RGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG------- 138
Query: 409 KNGQTREHALLAFTLGVKQLIVGVNKMD 492
QT + LAF + Q+I +NK+D
Sbjct: 139 VQAQTIANFWLAFEKNI-QIIPVINKID 165
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 56.0 bits (129), Expect = 2e-08
Identities = 47/148 (31%), Positives = 65/148 (43%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
NI + H+DSGK+T T ++Y G ID E+ +G +D + ER+
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRIDSM---------HEV-RGKDDVGATMDFMDLERQ 95
Query: 229 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 408
RGITI A + + IID PGH DF + D AVL++ G G G+
Sbjct: 96 RGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQ 150
Query: 409 KNGQTREHALLAFTLGVKQLIVGVNKMD 492
T L + + I VNKMD
Sbjct: 151 SQTFTVNRQLARYNV---PFICFVNKMD 175
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/113 (34%), Positives = 53/113 (46%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
NI VI HVD+GK+T T L+Y G I A + KG+ V D L ERE
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAIHV---------AGHVDKGNT----VTDFLDIERE 73
Query: 229 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 387
RGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 74 RGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 44.0 bits (99), Expect(2) = 5e-06
Identities = 38/108 (35%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Frame = +1
Query: 172 GKGSFKYAWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQ 348
GK + A ++ A GIT I + E +K VT +D PGH F G
Sbjct: 168 GKTTLLDAMRNSQIAAGEFGGITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKG 227
Query: 349 ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 492
AD VL+VAA G E QT + A V QL+V VNK+D
Sbjct: 228 ADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-QLVVAVNKID 267
Score = 23.0 bits (47), Expect(2) = 5e-06
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 52 IVVIGHVDSGKST 90
+ ++GHVD GK+T
Sbjct: 159 VTIMGHVDHGKTT 171
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 45.2 bits (102), Expect = 3e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 177
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 178 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 345
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALG 132
Query: 346 QADCAVLIVAAGTG 387
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 44.8 bits (101), Expect = 4e-05
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 13/134 (9%)
Frame = +1
Query: 25 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKF---EKEAQE----MGK 177
M +++ N+ VI HVD GKST T L+ K G I K +F K+ QE +
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGSKAGETRFTDTRKDEQERCITIKS 72
Query: 178 GSFKYAWVLDKLKAERERG----ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTS 345
+ + L+K E +G T+++ K + + + + +ID+PGH DF +
Sbjct: 73 TAISLFFELEKKDLEFVKGENQFETVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALR 132
Query: 346 QADCAVLIVAAGTG 387
D A+++V +G
Sbjct: 133 VTDGALVVVDCVSG 146
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 41.1 bits (92), Expect = 5e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Frame = +1
Query: 46 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 225
+N+ ++GHVDSGK+T T + E+G S A
Sbjct: 14 LNLGILGHVDSGKTTLT-------------------RRIAELGSTSAFDAHATSTTTDGI 54
Query: 226 ERGITIDIALWKFET-SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 402
R T+D+ + S + +ID PGH I+ ++ ++ D A++I+ + AG
Sbjct: 55 RRN-TLDLGFSTMTSLSGRRLALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAG 108
Query: 403 ISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 501
I QT EH LLA ++I+ +NK D E
Sbjct: 109 IQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE 139
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 40.3 bits (90), Expect = 8e-04
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 11/175 (6%)
Frame = +1
Query: 1 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 171
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 172 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 333
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEKYLKTTI 244
Query: 334 TGTS--QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 492
G + D +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 245 FGMTGHMPDYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 291
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +1
Query: 31 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 207
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 208 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 372
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Frame = +1
Query: 31 KEKTHI-NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 207
K HI N+ ++ HVD GK++ L+ I R G +Y +D
Sbjct: 15 KPAEHIRNVCLVAHVDHGKTSFADSLVSANAVISSRMA------------GKLRY---MD 59
Query: 208 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 372
+ E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 60 SREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 36.3 bits (80), Expect = 0.013
Identities = 49/176 (27%), Positives = 75/176 (42%), Gaps = 12/176 (6%)
Frame = +1
Query: 1 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKC---GGIDKRTIEKFEKEAQEM 171
++IRD P K+ + V+G+VD+GKST G L + G RT K E
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTHSALDDGRGAARTKLFRHKHEFES 185
Query: 172 GKGSFKYAWVL------DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMI 333
G+ S +L + + +D + +K VT ID GH ++K I
Sbjct: 186 GRTSSVGNDILGFDVHGNIVNKPDPHNHNLDWVQIGSDCAK-LVTFIDLAGHEIYLKTTI 244
Query: 334 TGTSQ---ADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 492
G + + +L++ A G G T+EH LA +L V +V V K+D
Sbjct: 245 FGMHRPYARNYTMLMIGANMGII-------GTTKEHLSLALSLHVPVYLV-VTKID 292
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 34.3 bits (75), Expect = 0.054
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 134 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 184
Query: 229 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 387
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 185 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 34.3 bits (75), Expect = 0.054
Identities = 28/113 (24%), Positives = 47/113 (41%)
Frame = +1
Query: 49 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
N+ + GH+ GK+T L+ ++T +F + E F ++K +
Sbjct: 9 NVAIAGHLHHGKTTFLDCLM-------EQTHPEFYRA--EDADARFTDILFIEKQRGCSI 59
Query: 229 RGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 387
+ + I + Y + IID PGH +F M AD V++V A G
Sbjct: 60 KSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.071
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +1
Query: 280 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 459
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 460 KQLIVGVNKMD 492
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 33.5 bits (73), Expect = 0.094
Identities = 47/157 (29%), Positives = 67/157 (42%), Gaps = 8/157 (5%)
Frame = +1
Query: 46 INIVVIGHVDSGKSTTTGHLIYKC--GGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 219
+ + V+G D GKST G L C G K I F + E+ G K + V + +
Sbjct: 169 VRLAVVGGCDVGKSTLCGVLTQGCLDDGNGKARIGIF-RFPHEVRTG--KTSSVCNDVIG 225
Query: 220 ERERGITIDIALWKF----ETSKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 381
RG ++ A E S VT+ID G + K I G + A L+VAA
Sbjct: 226 FDNRGKLVNYAQNSLEEMVEKSSKLVTLIDLAGDAKYQKTTIHGLTGYTPHFACLVVAA- 284
Query: 382 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 492
+ GI+ TREH L L + ++ + KMD
Sbjct: 285 ----DRGIT--WATREHLGLIAALNIPMFVL-ITKMD 314
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.094
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 485 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 357
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 30.3 bits (65), Expect = 0.87
Identities = 24/77 (31%), Positives = 34/77 (44%)
Frame = +1
Query: 289 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 468
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 469 IVGVNKMDSTEPPYSEP 519
++ +NK+D S P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 127 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 127 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 228
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.7
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 46 INIVVIGHVDSGKSTTT 96
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>AF040643-5|AAT81201.1| 299|Caenorhabditis elegans Hypothetical
protein F14D2.15 protein.
Length = 299
Score = 28.7 bits (61), Expect = 2.7
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Frame = -3
Query: 468 ELFDTEGESEQGMLTGLTVLRDTSFEF-----TGTGSYDEHSAISLRGSCDH--VLDEIS 310
E + +E E G+ L V RD F + +GTGS + H ++R DH + +
Sbjct: 24 EHYTSEEEDHFGIKWWLRVTRDDQFLYVDLGKSGTGSTNFHGNFNVRVESDHGVISENFK 83
Query: 309 VSRSINDGNIVLASFELPESNIDCDTTLTLSL*FVQYPSI 190
S S +D E+P ++ C++ +L + +Y SI
Sbjct: 84 FSGSKSDA-------EIPSTSNRCESFKWSNLDYSKYLSI 116
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 283 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 378
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,744,599
Number of Sequences: 27780
Number of extensions: 235537
Number of successful extensions: 716
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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