Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    70   2e-13
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   1.7  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    27   1.7  
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch...    26   3.0  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    25   6.8  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    25   6.8  
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    25   9.0  
SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.0  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 40/132 (30%), Positives = 67/132 (50%)
 Frame = +2

Query: 14  TGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLLAGLYVSSMSSCLGAMYGTPR 193
           T   LYL+ I+ + A+VTR  LL +  +   IS   + +++G+  S   S    ++G  +
Sbjct: 333 TTFLLYLLVILCVGASVTRTGLLLDMDVMEHISLHPLFIISGILSSGAFSSFMGIFGAAK 392

Query: 194 VLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMPFLI 373
           +LQ+IA + +IPG+     G   + +P Y                DIN L+ ++TM FL+
Sbjct: 393 LLQAIARDDLIPGMFFFAKGSSYDDIP-YVAIGVTYLITQISLFWDINMLSSMITMTFLL 451

Query: 374 TYASIDYSYFAL 409
           T+  I+ S F L
Sbjct: 452 TFGFINLSCFLL 463


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 348 GASLFMSPIIMNVTVTMATTTIEYIGTLFGPLPCPSISKPGITFS 214
           GA+   S        T  TT+    G LFG  P    +KPG T S
Sbjct: 364 GANQTSSGFSFGKPATDTTTSTSKTGPLFGNKPADPSAKPGATAS 408


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 52  SSNGHQRSLTKEFLYNCRHISCDCITVGGV 141
           SS+G     +K  LYN  HISC   ++ GV
Sbjct: 799 SSHGVLPVQSKMLLYNSNHISCPLSSIKGV 828


>SPAC732.01 |vma11||V-type ATPase proteolipid
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 134 AGLYVSSMSSCLGAMYGTPRVLQSIA 211
           AG+  S + SCLGA YGT    + IA
Sbjct: 16  AGVCASMVFSCLGAGYGTALAGRGIA 41


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 37  VHYNTSSNGHQRSLTKEFLYNCRHISCDCITVGGVVC 147
           ++Y+     H+ SLTK    NC H     IT    +C
Sbjct: 464 IYYSCLILIHRHSLTKNLQVNCVHRGTGSITDSQALC 500


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +1

Query: 88  FLYNCRHISCDCITVGG 138
           F Y C  ISCD IT  G
Sbjct: 391 FSYVCNEISCDGITANG 407


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 88  FLYNCRHISCDCITVGGVVC*LDEFML 168
           FL N R  SC  ++ G V C    F+L
Sbjct: 211 FLKNLRRFSCPILSYGAVFCSFLAFLL 237


>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 201 CNTLGVPYMAPKHELIELTYNPANSNTITADM-SAVIE 91
           CN  G P       L  +TYNP  +    +D+ +AV++
Sbjct: 294 CNIAGKPVACATQMLESMTYNPRPTRAEVSDVGNAVLD 331


>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 382 SVCDEEWHSDDGCELVYVAD 323
           S C  EW +D+ C +VY  D
Sbjct: 62  SQCTIEWINDNECNVVYADD 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,350
Number of Sequences: 5004
Number of extensions: 42966
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)