Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307C04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 65 3e-11
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 50 1e-06
10_08_0135 - 15118082-15118300,15118388-15118546,15118783-151188... 35 0.034
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 30 0.98
02_01_0141 + 1017654-1017745,1018332-1018389,1018485-1018595,101... 29 1.7
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 4.0
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 28 4.0
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 27 6.9
06_01_0308 + 2229025-2229260,2229448-2230145,2230377-2230469,223... 27 9.1
05_07_0101 - 27690927-27691208,27691695-27692474 27 9.1
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADIS-AVIVLLLAGLYVSSMSSCLGAM 178
+A T T +YL ++ A TRE LL + +TA ++ ++ G+ +S++ + L ++
Sbjct: 334 SATLTTTAMYLFSVLLFGALATREELLTDRLLTATVAWPAPAVIYIGIILSTLGAALQSL 393
Query: 179 YGTPRVLQSIANEKVIPGLDI--LGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPI 352
G PR+L +IAN+ ++P L+ + G P+ +++ G+++ + P
Sbjct: 394 TGAPRLLAAIANDDILPVLNYFKVSEGAEPHSATLFT----AFICICCVVIGNLDLITPT 449
Query: 353 VTMPFLITYASIDYSYFAL 409
+TM FL+ YA ++ S F L
Sbjct: 450 ITMFFLLCYAGVNLSCFLL 468
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 49.6 bits (113), Expect = 1e-06
Identities = 40/136 (29%), Positives = 65/136 (47%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLLAGLYVSSMSSCLGAMY 181
A I+T T +YL+ + A TRE LL + + A AV A +Y + L ++
Sbjct: 334 ATIST-TMMYLLSVFLFGALSTREGLLTDRLLCA---AVAWPSPAVVYAGA---ALQSLT 386
Query: 182 GTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTM 361
G PR+L +IAN+ ++P L+ G P + G+++ + P +TM
Sbjct: 387 GAPRLLAAIANDDILPVLNYFKAYEGSE--PHVATLFTSFICISCVIIGNLDVITPTITM 444
Query: 362 PFLITYASIDYSYFAL 409
FL+ YA ++ S F L
Sbjct: 445 FFLLCYAGVNLSCFLL 460
>10_08_0135 -
15118082-15118300,15118388-15118546,15118783-15118849,
15118969-15119141,15119602-15119698,15119782-15119900,
15120000-15120140,15120214-15120298,15120411-15120612,
15120906-15120970,15121365-15121654
Length = 538
Score = 35.1 bits (77), Expect = 0.034
Identities = 33/165 (20%), Positives = 69/165 (41%), Gaps = 5/165 (3%)
Frame = +2
Query: 23 FLYLMFIITLAATVTREALLKNFSITADISA-----VIVLLLAGLYVSSMSSCLGAMYGT 187
FLY+M I + V AL N I++ + + ++ G + ++S +GA+
Sbjct: 354 FLYMMVSIVIVGLVPYYALDPNTPISSAFAKYGMQWAVYIISTGAVFALIASLIGAILPQ 413
Query: 188 PRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMPF 367
PR++ ++A + ++P L +VP S D+++LA +V++
Sbjct: 414 PRIVMAMARDGLLPPL--FSAVDPTTQVPTLSTILSGICAAILALFMDVSELAGMVSVGT 471
Query: 368 LITYASIDYSYFALAQTFDLQHKREMRFQGQSQRDTQVYGATGSD 502
L+ + + S + + ++ G S+ T G + D
Sbjct: 472 LLAFTMVAISVLIVRYAPPNEIATKVALPGSSESLTSDSGYSEPD 516
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 30.3 bits (65), Expect = 0.98
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = -3
Query: 369 RNGIVTMGASLFMSPIIMNVTVTMATTTIEYIGTLFGPLPCPSISKPGITFSLAMLCNT- 193
R G++ +GA SP ++ T IEY T+ L ++ K G+ + C+
Sbjct: 66 RRGLLALGAGFLASPGLLCPAGDAGATRIEYYATVGDKLCDMNVVKSGLGY-----CDVE 120
Query: 192 LGVPYMAPKHELIELTYNPANSNTITAD 109
+G P+ +LI + Y ++ I D
Sbjct: 121 VGTGAQPPRGQLINVHYTARFTDGIVFD 148
>02_01_0141 +
1017654-1017745,1018332-1018389,1018485-1018595,
1018853-1018990,1019559-1019628,1019711-1019766,
1020203-1020328,1020648-1020787,1020932-1021004,
1021095-1021169,1021277-1021591
Length = 417
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 22 LFIPHVHYNTSSNGHQRSLTKEFLYNC--RHISCDCITVGG 138
LF+P+ H NT+ NG L + L N RH C+ G
Sbjct: 219 LFMPYDHKNTTPNGASAHLMRTVLENLNHRHFQDSCLVGSG 259
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/25 (44%), Positives = 20/25 (80%)
Frame = +2
Query: 44 ITLAATVTREALLKNFSITADISAV 118
+T+A+ T+E +LK++++ AD SAV
Sbjct: 1425 VTIASRTTKELILKDYAMEADDSAV 1449
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 298 HRDGHIHYNRRHKQARTHRHYAIPHH 375
HRD H H ++RH R H H HH
Sbjct: 126 HRDQHDHQSQRHHH-RHHHHQRQRHH 150
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 298 HRDGHIHYNRRHKQARTHRH 357
H D H HY+ H Q R H H
Sbjct: 550 HGDHHHHYHGGHHQRRRHHH 569
>06_01_0308 +
2229025-2229260,2229448-2230145,2230377-2230469,
2230815-2231992
Length = 734
Score = 27.1 bits (57), Expect = 9.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 352 DGCELVYVADYNECD 308
DGC +V +AD NEC+
Sbjct: 308 DGCRVVNIADINECN 322
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 255 LPCPSISKPGITFSLAMLCNTLGVPYMAPKH 163
+PC +S PG ++A C TLG + A H
Sbjct: 30 IPCIDLSAPGAAAAVADACRTLGF-FKATNH 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,894,605
Number of Sequences: 37544
Number of extensions: 282878
Number of successful extensions: 815
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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