Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307C04f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p... 59 2e-09
Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical p... 59 2e-09
U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical pr... 59 2e-09
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ... 59 2e-09
AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical ... 59 2e-09
AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical ... 52 2e-07
AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical ... 52 2e-07
AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical ... 52 2e-07
U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass... 40 0.001
AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical ... 36 0.023
AL031627-7|CAA20959.2| 200|Caenorhabditis elegans Hypothetical ... 28 4.7
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 6.2
AF039042-7|AAC48250.1| 336|Caenorhabditis elegans Seven tm rece... 27 6.2
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 27 6.2
>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = +2
Query: 125 LLLAGLYVSSMSSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXX 304
L+ AG++ +++SS L ++ P+V Q++ +++ P +D G N+ P +
Sbjct: 552 LITAGIFAATLSSALASLVSAPKVFQAVCKDRLFPRIDYFAKTYGKNEEPKRAYVLGFFL 611
Query: 305 XXXXXXXGDINKLAPIVTMPFLITYASIDYSYF 403
GD+N +API++ FL +YA I+Y+ F
Sbjct: 612 AMGIVAIGDLNVIAPIISNFFLGSYALINYACF 644
>Z82268-10|CAB05202.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = +2
Query: 125 LLLAGLYVSSMSSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXX 304
L+ AG++ +++SS L ++ P+V Q++ +++ P +D G N+ P +
Sbjct: 552 LITAGIFAATLSSALASLVSAPKVFQAVCKDRLFPRIDYFAKTYGKNEEPKRAYVLGFFL 611
Query: 305 XXXXXXXGDINKLAPIVTMPFLITYASIDYSYF 403
GD+N +API++ FL +YA I+Y+ F
Sbjct: 612 AMGIVAIGDLNVIAPIISNFFLGSYALINYACF 644
>U41264-3|AAA82423.1| 574|Caenorhabditis elegans Hypothetical
protein F10E7.9 protein.
Length = 574
Score = 59.3 bits (137), Expect = 2e-09
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +2
Query: 257 GPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMPFLITYASIDYSYFALAQTFDLQHK 436
GPN P+ + GD+N+LA + TMPFLITYA ++YSY +LA ++DL
Sbjct: 347 GPNDNPVLAGYLLMGVASLFVLLGDLNQLAILSTMPFLITYAYVNYSYVSLAMSYDL--- 403
Query: 437 REMRFQGQSQRDTQVYGATG--SDLDLLFP 520
Q + +T YG+T +DL+ LFP
Sbjct: 404 --ATVQHADEVETVGYGSTNKMNDLNELFP 431
>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
protein Y37A1C.1c protein.
Length = 1210
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = +2
Query: 125 LLLAGLYVSSMSSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXX 304
L+ AG++ +++SS L ++ P+V Q++ +++ P +D G N+ P +
Sbjct: 552 LITAGIFAATLSSALASLVSAPKVFQAVCKDRLFPRIDYFAKTYGKNEEPKRAYVLGFFL 611
Query: 305 XXXXXXXGDINKLAPIVTMPFLITYASIDYSYF 403
GD+N +API++ FL +YA I+Y+ F
Sbjct: 612 AMGIVAIGDLNVIAPIISNFFLGSYALINYACF 644
>AL021476-1|CAA16317.1| 972|Caenorhabditis elegans Hypothetical
protein Y37A1C.1a protein.
Length = 972
Score = 59.3 bits (137), Expect = 2e-09
Identities = 27/93 (29%), Positives = 51/93 (54%)
Frame = +2
Query: 125 LLLAGLYVSSMSSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXX 304
L+ AG++ +++SS L ++ P+V Q++ +++ P +D G N+ P +
Sbjct: 552 LITAGIFAATLSSALASLVSAPKVFQAVCKDRLFPRIDYFAKTYGKNEEPKRAYVLGFFL 611
Query: 305 XXXXXXXGDINKLAPIVTMPFLITYASIDYSYF 403
GD+N +API++ FL +YA I+Y+ F
Sbjct: 612 AMGIVAIGDLNVIAPIISNFFLGSYALINYACF 644
>AF040650-3|ABE73333.1| 836|Caenorhabditis elegans Hypothetical
protein T04B8.5c protein.
Length = 836
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/138 (22%), Positives = 69/138 (50%)
Frame = +2
Query: 5 AITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLLAGLYVSSMSSCLGAMYG 184
A+ F+Y+M +A T +R L ++++ D + V +L G++ +++ S + + G
Sbjct: 242 AVFMTLFVYVMTAFLMATTSSRYLLQNDYTVMMDTNFHRVFILIGIFSTTLFSSMSNLIG 301
Query: 185 TPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMP 364
+ RVL ++++K+ L ++ P+ S+ G +NK+A + ++
Sbjct: 302 SSRVLNRLSHDKLFGCLLRPAKIEIGDRNPVVSVVITWMCVVLVFLVGAMNKIAKLTSIF 361
Query: 365 FLITYASIDYSYFALAQT 418
FL++Y ++ + AL T
Sbjct: 362 FLLSYMGVNVATLALELT 379
>AF040650-2|AAT81190.1| 939|Caenorhabditis elegans Hypothetical
protein T04B8.5b protein.
Length = 939
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/138 (22%), Positives = 69/138 (50%)
Frame = +2
Query: 5 AITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLLAGLYVSSMSSCLGAMYG 184
A+ F+Y+M +A T +R L ++++ D + V +L G++ +++ S + + G
Sbjct: 345 AVFMTLFVYVMTAFLMATTSSRYLLQNDYTVMMDTNFHRVFILIGIFSTTLFSSMSNLIG 404
Query: 185 TPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMP 364
+ RVL ++++K+ L ++ P+ S+ G +NK+A + ++
Sbjct: 405 SSRVLNRLSHDKLFGCLLRPAKIEIGDRNPVVSVVITWMCVVLVFLVGAMNKIAKLTSIF 464
Query: 365 FLITYASIDYSYFALAQT 418
FL++Y ++ + AL T
Sbjct: 465 FLLSYMGVNVATLALELT 482
>AF040650-1|AAB95011.1| 952|Caenorhabditis elegans Hypothetical
protein T04B8.5a protein.
Length = 952
Score = 52.4 bits (120), Expect = 2e-07
Identities = 31/138 (22%), Positives = 69/138 (50%)
Frame = +2
Query: 5 AITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLLAGLYVSSMSSCLGAMYG 184
A+ F+Y+M +A T +R L ++++ D + V +L G++ +++ S + + G
Sbjct: 358 AVFMTLFVYVMTAFLMATTSSRYLLQNDYTVMMDTNFHRVFILIGIFSTTLFSSMSNLIG 417
Query: 185 TPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMP 364
+ RVL ++++K+ L ++ P+ S+ G +NK+A + ++
Sbjct: 418 SSRVLNRLSHDKLFGCLLRPAKIEIGDRNPVVSVVITWMCVVLVFLVGAMNKIAKLTSIF 477
Query: 365 FLITYASIDYSYFALAQT 418
FL++Y ++ + AL T
Sbjct: 478 FLLSYMGVNVATLALELT 495
>U23171-3|AAC46706.1| 1020|Caenorhabditis elegans Hypothetical
protein K02A2.3 protein.
Length = 1020
Score = 42.3 bits (95), Expect = 2e-04
Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 8/133 (6%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLL--------LAGLYVSSM 157
A +TT Y++ I+ ++TR L F + + V+ L G ++S+
Sbjct: 417 ATLTTSAIYYILAIL-FGGSITRSVLRDKFGRSIGNTMVVAALSWPHPAVVTVGAFLSTF 475
Query: 158 SSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDIN 337
+ L + PR+LQSIA + VIP L N P + G ++
Sbjct: 476 GAALQCLCSAPRLLQSIAKDDVIPILAPFARVT-KNNEPFLGLVLTVIIAECGILLGAVD 534
Query: 338 KLAPIVTMPFLIT 376
K+A ++ FL+T
Sbjct: 535 KIAEVLDFFFLMT 547
>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
assigned gene nameprotein 158 protein.
Length = 1003
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +2
Query: 125 LLLAGLYVSSMSSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXX 304
+LL G ++S+ + L + PR+LQ+IA ++VIP L N+ P +
Sbjct: 415 VLLIGSFLSTFGAALQCLCSAPRLLQAIAKDEVIPLLSPFKKVTANNE-PFLGLILTTII 473
Query: 305 XXXXXXXGDINKLAPIVTMPFLITYASID 391
G ++ +A +V FL+ YA ++
Sbjct: 474 AEIAILMGSMDTIAAVVDFFFLMCYAFVN 502
>AC006659-2|AAF39883.2| 977|Caenorhabditis elegans Hypothetical
protein H16O14.1 protein.
Length = 977
Score = 35.5 bits (78), Expect = 0.023
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 8/138 (5%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIV--------LLLAGLYVSSM 157
AA +F+YL+ ++ A+V+ + + +A +I ++L G ++S+
Sbjct: 334 AAQNFSSFIYLLGVVLFGASVSEMFIRDKYGRSAMGKLIISEISWPFPQVILFGCFMSTA 393
Query: 158 SSCLGAMYGTPRVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDIN 337
+ + ++ G PR+LQ+IA + V+P L PI ++ I
Sbjct: 394 GAGMQSLTGAPRLLQAIAADDVLPFLKPF-RKMDSRGEPIRAILLTLAICECGILIAVIE 452
Query: 338 KLAPIVTMPFLITYASID 391
+ ++T FL+ Y ++
Sbjct: 453 NITALITQFFLMCYLGVN 470
>AL031627-7|CAA20959.2| 200|Caenorhabditis elegans Hypothetical
protein Y102A5C.16 protein.
Length = 200
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -3
Query: 387 ILAYVMRNGIVTMGASLFMSPIIMNVTVTMATTTIEYIGTLFGPLPCPS 241
+L V R+ I T +PI T T TTT T P+PCP+
Sbjct: 8 VLISVARSCIPTQQIETTSAPITTTTTTTTTTTTSTTTTT---PIPCPT 53
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 349 GCELVYVADYNECDRHDGNYDH 284
GC+ AD NEC + +G+ DH
Sbjct: 618 GCQRTSCADINECLKDNGHCDH 639
>AF039042-7|AAC48250.1| 336|Caenorhabditis elegans Seven tm
receptor protein 160 protein.
Length = 336
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -3
Query: 372 MRNGIVTMGASLFMSPIIMNVTVTMATTTIEYIGT 268
M NG V + + +IMN+++ + TI Y GT
Sbjct: 190 MENGNVNLSVDYLLKFLIMNISMIIPFFTIVYYGT 224
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 315 NVTVTMATTTIEYIGTLFGPLPCPSISKPG 226
N T+T+ Y GP+PCP + PG
Sbjct: 531 NNTITIGNVCYIYEYVRDGPVPCPYVKPPG 560
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,891
Number of Sequences: 27780
Number of extensions: 251765
Number of successful extensions: 734
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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