Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    27   0.088
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.36 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.47 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.82 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.1  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   3.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   3.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.8  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.088
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
 Frame = -3

Query: 240 ISKPGITFSLAMLCNTLGVPYM---APKHELIELTYNPANSNTITADMSAVIEKF-FSKA 73
           ISK G T   A+L  TLGV  +     K ++ +  Y+ A    I  ++S+ I+K  ++ A
Sbjct: 127 ISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYNTA 186

Query: 72  SLVTVAAS 49
           S+  V  S
Sbjct: 187 SVAFVPIS 194


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 217 KSNTWLRYTWT 249
           KSN WLR+ WT
Sbjct: 74  KSNVWLRFIWT 84


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 105 SAVIEKFFSKASLVTVAASVIMNMRY 28
           SAV  KF    +L+TVA S+++  RY
Sbjct: 699 SAVPSKFCLSVTLLTVATSLVIVSRY 724


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 298 HRDGHIHYNRRHKQARTHRHYAIPHH 375
           H   HIH    H     H H A PHH
Sbjct: 421 HGHSHIHATPHHH----HSHAATPHH 442


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -3

Query: 516 KSKSRSLPVAP-YTCVSRCDCP*NLISRL 433
           K K R  P  P Y C  RC+C  + I+R+
Sbjct: 460 KHKIRVPPGTPIYECNKRCNCDIDCINRV 488


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 275 SVLCSDLSHVQVYLSQVLLFHWLCFVTL*EYRTWPPSMN 159
           ++L  +  +   Y S +  +H   FVT+  Y   P S+N
Sbjct: 53  AILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLN 91


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 275 SVLCSDLSHVQVYLSQVLLFHWLCFVTL*EYRTWPPSMN 159
           ++L  +  +   Y S +  +H   FVT+  Y   P S+N
Sbjct: 53  AILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLN 91


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -1

Query: 275 SVLCSDLSHVQVYLSQVLLFHWLCFVTL*EYRTWPPSMN 159
           ++L  +  +   Y S +  +H   FVT+  Y   P S+N
Sbjct: 53  AILSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGVPSSLN 91


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 316 HYNRRHKQAR 345
           HYN  H QAR
Sbjct: 424 HYNHNHNQAR 433


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 364 WHSDDGCELVYVADYN 317
           WH+D G E V   DY+
Sbjct: 139 WHTDQGEEFVPGDDYD 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,603
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)