Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307C04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30450.3 68414.m03722 cation-chloride cotransporter, putative... 61 5e-10
At1g30450.2 68414.m03721 cation-chloride cotransporter, putative... 61 5e-10
At1g30450.1 68414.m03720 cation-chloride cotransporter, putative... 61 5e-10
At1g58030.1 68414.m06577 amino acid permease family protein simi... 36 0.017
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 29 2.5
At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putat... 28 3.3
At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putat... 28 3.3
At4g24780.1 68417.m03548 pectate lyase family protein similar to... 27 5.8
At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1) id... 27 5.8
At4g38290.1 68417.m05410 expressed protein 27 7.7
>At1g30450.3 68414.m03722 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 60.9 bits (141), Expect = 5e-10
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLL-AGLYVSSMSSCLGAM 178
AA T T LYL+ ++ A TR+ LL + +TA I+ ++ G+ +S++ + L ++
Sbjct: 400 AATLTTTSLYLISVLFFGAVATRDKLLTDRLLTATIAWPFPAIVHVGIILSTLGAALQSL 459
Query: 179 YGTPRVLQSIANEKVIPGLDILGHGR-GPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIV 355
G PR+L +IAN+ ++P IL + + P + G+++ + P V
Sbjct: 460 TGAPRLLAAIANDDILP---ILNYFKVADTSEPHIATLFTAFICIGCVVIGNLDLITPTV 516
Query: 356 TMPFLITYASIDYSYFAL 409
TM +L+ Y+ ++ S F L
Sbjct: 517 TMFYLLCYSGVNLSCFLL 534
>At1g30450.2 68414.m03721 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 60.9 bits (141), Expect = 5e-10
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLL-AGLYVSSMSSCLGAM 178
AA T T LYL+ ++ A TR+ LL + +TA I+ ++ G+ +S++ + L ++
Sbjct: 400 AATLTTTSLYLISVLFFGAVATRDKLLTDRLLTATIAWPFPAIVHVGIILSTLGAALQSL 459
Query: 179 YGTPRVLQSIANEKVIPGLDILGHGR-GPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIV 355
G PR+L +IAN+ ++P IL + + P + G+++ + P V
Sbjct: 460 TGAPRLLAAIANDDILP---ILNYFKVADTSEPHIATLFTAFICIGCVVIGNLDLITPTV 516
Query: 356 TMPFLITYASIDYSYFAL 409
TM +L+ Y+ ++ S F L
Sbjct: 517 TMFYLLCYSGVNLSCFLL 534
>At1g30450.1 68414.m03720 cation-chloride cotransporter, putative
similar to cation-chloride co-transporter GB:AAC49874
GI:2582381 from [Nicotiana tabacum], Cation-Chloride
Cotransporter (CCC) Family Member, PMID:11500563
Length = 975
Score = 60.9 bits (141), Expect = 5e-10
Identities = 39/138 (28%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Frame = +2
Query: 2 AAITTGTFLYLMFIITLAATVTREALLKNFSITADISAVIVLLL-AGLYVSSMSSCLGAM 178
AA T T LYL+ ++ A TR+ LL + +TA I+ ++ G+ +S++ + L ++
Sbjct: 400 AATLTTTSLYLISVLFFGAVATRDKLLTDRLLTATIAWPFPAIVHVGIILSTLGAALQSL 459
Query: 179 YGTPRVLQSIANEKVIPGLDILGHGR-GPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIV 355
G PR+L +IAN+ ++P IL + + P + G+++ + P V
Sbjct: 460 TGAPRLLAAIANDDILP---ILNYFKVADTSEPHIATLFTAFICIGCVVIGNLDLITPTV 516
Query: 356 TMPFLITYASIDYSYFAL 409
TM +L+ Y+ ++ S F L
Sbjct: 517 TMFYLLCYSGVNLSCFLL 534
>At1g58030.1 68414.m06577 amino acid permease family protein similar
to SP|P18581 Low-affinity cationic amino acid
transporter-2 (CAT-2) (T-cell early activation protein)
{Mus musculus}; contains Pfam profile PF00324: Amino
acid permease
Length = 635
Score = 35.9 bits (79), Expect = 0.017
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Frame = +2
Query: 26 LYLMFIITLAATVTREALLKNFSITA-----DISAVIVLLLAGLYVSSMSSCLGAMYGTP 190
LY+M I + + A+ + I++ D+ + L+ G ++ S+ +GA+ P
Sbjct: 289 LYMMVSIVIVGLIPYYAMDPDTPISSAFASHDMQWAVYLITLGAVMALCSALMGALLPQP 348
Query: 191 RVLQSIANEKVIPGLDILGHGRGPNKVPIYSMXXXXXXXXXXXXXGDINKLAPIVTMPFL 370
R+L ++A + ++P I +VP+ + D+++LA +V++ L
Sbjct: 349 RILMAMARDGLLP--SIFSDINKRTQVPVKATVATGLCAATLAFFMDVSQLAGMVSVGTL 406
Query: 371 ITYASIDYSYFAL 409
+ + + S L
Sbjct: 407 LAFTMVAISVLIL 419
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 28.7 bits (61), Expect = 2.5
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 476 ACHVAIVLETSFLVCVANQMSELTQSKNNR 387
AC ++IVLE +V V NQ S L+ KN+R
Sbjct: 300 ACEISIVLEGEGMVRVVNQQS-LSSCKNDR 328
>At4g33520.3 68417.m04762 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 4 SYHYWNLFIPHVHYNTSSNGHQRSLTKEFLYNCRHISCDC 123
++ +WNLF HV + NG SL + + ++C C
Sbjct: 517 TFTFWNLFGAHVLPSALHNGSPMSLALQLSCSVLVVACPC 556
>At4g33520.2 68417.m04761 metal-transporting P-type ATPase, putative
(PAA1) nearly identical to gi:2668492; contains Pfam
heavy-metal-associated domain PF00403
Length = 949
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 4 SYHYWNLFIPHVHYNTSSNGHQRSLTKEFLYNCRHISCDC 123
++ +WNLF HV + NG SL + + ++C C
Sbjct: 517 TFTFWNLFGAHVLPSALHNGSPMSLALQLSCSVLVVACPC 556
>At4g24780.1 68417.m03548 pectate lyase family protein similar to
pectate lyase GP:14289169 from [Salix gilgiana]
Length = 408
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 166 LGGHVRYS*SVTKHSQ*KSNTWLRYTW 246
L ++R+S VTKH + W R+ W
Sbjct: 326 LAPNIRFSKEVTKHEDAPESEWKRWNW 352
>At3g24050.1 68416.m03020 GATA transcription factor 1 (GATA-1)
identical to GATA transcription factor 1 (AtGATA-1)
GB:Y13648 [Arabidopsis thaliana]
Length = 274
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 204 LCNTLGVPYMAPKHELIELTYNPANSNTITADM 106
LCN GV Y + + + Y PANS T TA++
Sbjct: 217 LCNACGVRYKSGR---LVPEYRPANSPTFTAEL 246
>At4g38290.1 68417.m05410 expressed protein
Length = 108
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +2
Query: 92 SITADI-SAVIVLLLAGLYVSSMSSCLGAMYGTPRVLQSI-ANEKVIPG-LDILGH 250
SI DI +AVIV +Y++ +G +YG ++ + E+ +PG DI GH
Sbjct: 21 SIIQDIVTAVIVTRREDIYLTGYEILMGLLYGLGALVYATRIPERWMPGKFDIAGH 76
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,222
Number of Sequences: 28952
Number of extensions: 229433
Number of successful extensions: 623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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