Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    29   0.32 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   0.97 
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   1.3  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   3.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.9  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   5.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.8  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   6.8  
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    25   9.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.0  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   9.0  

>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +2

Query: 152 LIKYRHLDLSQLRLLPINIMYNYPGVESRNLAA--CPCRLSLIFHRIQSMQGLHRHPCPC 325
           LI   H+D   ++ L +N  YN  G+    L A  CP     +F  +QS Q   R    C
Sbjct: 243 LINVMHVDEQYVKRLKLNQPYNIMGITVYVLDANHCPGSAMFVFETLQSNQ--TRRVLHC 300

Query: 326 RPYLRTRTVLCPPIYRPR 379
             +  ++  +  P+ R +
Sbjct: 301 GDFRASKDHVMHPVLREK 318


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 116 TVR*AHHNRPRFLIKYRHLDLSQLRLLPINI 208
           T+   HHN   F+ ++R +DL  L LL I +
Sbjct: 263 TLNLPHHNHVSFMTRFRKIDLKGLILLIIGV 293


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 342 PARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGT 461
           P  S++  +T+PA      +PST   T+  AT++ + S +
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +1

Query: 118 SPVGTP--QPPAIPNQVSPPGPIPTQTFTNQHYVQLP 222
           SP+GT     PAI  QV+P  P P  T   +H+   P
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPP 747


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 SEIDSPVGTPQPPAIPNQVSPPGPIPTQTFT 198
           + + S V  P PPA P+Q  PP P PT   T
Sbjct: 264 NNLGSQVNIPPPPATPSQ--PPRP-PTNAST 291


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 309  GTRAHAARTYAPARS-SARQSTAPAAACHARRPSTSA 416
            GT    A ++  A S +  + TAPAA+  A  P+TSA
Sbjct: 927  GTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSA 963


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 171 WTYPNSDFYQS 203
           WTYP S FYQ+
Sbjct: 362 WTYPGSQFYQN 372


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 142 PAIPNQVSPPGPIPT 186
           P +P ++ PPGP PT
Sbjct: 762 PEMPTRMPPPGPSPT 776


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 77  ALKTFSFYKSLKL-TVR*AHHNRPRFLIKYRHLDLSQLRLLP 199
           AL+ +  Y  LKL T   +   +  FL+K+  +D   LRLLP
Sbjct: 35  ALQAYKIYDLLKLETSSISDVPKSGFLVKWIIIDAIYLRLLP 76


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
 Frame = +1

Query: 7   IRHEEHAYFAQQYPQQRPITEVI-----GSQNFFFLQESEIDSPVGTPQPPAIPNQVSPP 171
           +R EE A      P Q P    I     G  N+   Q ++   PV  P P   P Q +PP
Sbjct: 74  LRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQPV-QPNPYGAPYQQAPP 132

Query: 172 GPIPTQTFTNQHYVQLPGG 228
              P   + N     +P G
Sbjct: 133 AGAPYYMYPNAPAQFVPPG 151


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 8/30 (26%)
 Frame = +1

Query: 97  LQESEIDS--------PVGTPQPPAIPNQV 162
           LQ+ E+DS        PV TP  PA+P+QV
Sbjct: 166 LQQMELDSKMLGAEKPPVHTPAVPAVPSQV 195


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +1

Query: 121 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 222
           P   P PPA P    PP P P          +LP
Sbjct: 464 PAAPPLPPAAP--APPPAPAPAPAAPVASIAELP 495


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/52 (28%), Positives = 21/52 (40%)
 Frame = +1

Query: 55  RPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHY 210
           RP    IG+    F Q     S  G P+    P++V  PG IP       ++
Sbjct: 308 RPTVSPIGTS---FRQSLPDISAFGIPKTETNPSEVVAPGTIPISVLPTSNF 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,223
Number of Sequences: 5004
Number of extensions: 33917
Number of successful extensions: 144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)