Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307C03f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 36 0.027
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.027
SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6) 32 0.25
SB_36777| Best HMM Match : VWA (HMM E-Value=0) 31 0.44
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 0.58
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 1.0
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 30 1.0
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 2.3
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 28 4.1
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 4.1
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 5.4
SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048) 28 5.4
SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052) 28 5.4
SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_22339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 27 7.1
SB_6911| Best HMM Match : Ank (HMM E-Value=0) 27 7.1
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0) 27 9.4
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 103 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 231
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 400
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +1
Query: 103 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGGR 231
+S ++S P PP IP + SPPG PIPTQ N HY LPG +
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSK 367
>SB_3839| Best HMM Match : Lep_receptor_Ig (HMM E-Value=6)
Length = 286
Score = 32.3 bits (70), Expect = 0.25
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTSLLRPFCKK 490
C RP+ R PP+ P R PLHL P T S+ L+ + L+RP+C
Sbjct: 181 CLVRPWCSARVRSSPPLASLDPGVR-QEYGPLHLLPRWTLVFGKSTVLFTSCLVRPWCSA 239
Query: 491 ILRRXSPV 514
+R PV
Sbjct: 240 RVRSSPPV 247
>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1303
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +1
Query: 10 RHEEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 183
R + +YF Q + + + +Q + ++ + V TP P +PN V P P P
Sbjct: 1216 RKGDTSYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPNPVPQPAPAP 1273
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 121 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 225
P+G P +P PPGP P TF + H+ Q G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 311 HPCP--CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 436
HPCP C + T L P I P C+ + P H+ P+ +C+
Sbjct: 320 HPCPLPCFEECKPCTELLPKII-PECQHEQQVPCHIDPWEFKCS 362
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = +3
Query: 333 TYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARSAKRY 494
+Y+P + RQ P+ RTSHN + DSG Y S K Y
Sbjct: 1571 SYSPGKHQRRQGHKERIIASQNSPAAKIRTSHN--KEPNDSGPAWFYPVSNKHY 1622
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 306 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 443
+G + ++T P + +QST P A H RR ST R+ +++ S
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS 1138
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 326 RPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 436
+PYLRT TV P + + +L RT L P C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.3 bits (60), Expect = 4.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 309 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 446
G R A+ Y ARS ++ +A AA R AR+ +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 118 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 222
+P G P PPA P + PP P P TF N + P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 124 VGTPQPPAIPNQVSPPGPIPTQ 189
+G+ PP +P +V PGPI Q
Sbjct: 49 MGSKGPPGVPGEVGKPGPIGYQ 70
>SB_13861| Best HMM Match : Collagen (HMM E-Value=0.00048)
Length = 763
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = +1
Query: 4 RIRHEEHAYFAQQYPQQRPITEVIGSQ----NFFFLQESEIDSPVGTPQPPAIPNQVSPP 171
R+R +EH A Q+ Q+ +I +Q N S + P G P P +P P
Sbjct: 136 RVR-KEHDAMAVQFKIQKHRITLIETQLKDINHTVRNTSRLPGPQGPPGPQGLPGPQGVP 194
Query: 172 GP 177
GP
Sbjct: 195 GP 196
>SB_5523| Best HMM Match : Extensin_2 (HMM E-Value=0.0052)
Length = 532
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +2
Query: 230 ESRNLAACPCRLSLIFH----RIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRT 397
++ ++ P R L +H + + Q H P R +L L PP ++ T
Sbjct: 175 QTYHVTLTPPRKHLTYHVTLTQPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLT 234
Query: 398 PP-LHLSPYITQCNPLSSRLWYTSLLRP 478
PP HL+ ++T P + ++ +L P
Sbjct: 235 PPRKHLTYHVTLTPPRKHQTYHVTLTPP 262
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +2
Query: 296 QGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPP-LHLSPYITQCNPLSSRLWYTSLL 472
Q H P R +L L PP ++ TPP HL+ ++T P + ++ +L
Sbjct: 227 QTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLTPPRKHLTYHVTLTPPRKHQTYHVTLT 286
Query: 473 RP 478
P
Sbjct: 287 PP 288
>SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTSLLRPFCKK 490
C P+ R PP+ P R PLHL P T S+ L+ + L+ P+C
Sbjct: 360 CLVGPWCSARVRSSPPVASLDPGVR-QEYGPLHLLPRWTLVYGKSTVLFTSCLVGPWCSA 418
Query: 491 ILRRXSPV 514
+R PV
Sbjct: 419 RVRSSPPV 426
>SB_22339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.1
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 317 CPCRPYLRTRTVLCPPIYR--PRCRLSRTPPLHLSPYITQCNPLSSRLWYTSLLRPFCKK 490
C P+ R PP+ P R PLHL P T S+ L+ + L+ P+C
Sbjct: 92 CLVGPWCSARVRSSPPVASLDPGVR-QEYGPLHLLPRWTLVYGKSTVLFTSCLVGPWCSA 150
Query: 491 ILRRXSPV 514
+R PV
Sbjct: 151 RVRSSPPV 158
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 106 SEIDSPVGTPQPPAIPNQVSPPGPIP 183
S +P+ PPA+P +PP +P
Sbjct: 404 SRTQAPIAVHVPPAVPQHPAPPPAVP 429
>SB_6911| Best HMM Match : Ank (HMM E-Value=0)
Length = 1961
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 254 PCRLSLIFHRIQSMQGLHRHPCPCRP 331
P +++ + R+ M+ LH+H PC P
Sbjct: 926 PMQIAAQYGRVSVMEVLHKHGAPCDP 951
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 133 PQPPAIPNQVSPPGPIP 183
PQPP +P+ +PP P P
Sbjct: 1167 PQPPPVPSVQAPPAPPP 1183
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 103 ESEIDSPVGTPQPPAIPNQVSPPGP 177
E +D P G PP P Q PPGP
Sbjct: 1047 EKGLDGPSG---PPGTPGQPGPPGP 1068
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/61 (26%), Positives = 24/61 (39%)
Frame = +1
Query: 4 RIRHEEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 183
+++H +H QQ Q + NF F Q + + P P + Q P P P
Sbjct: 118 QVKHVQH--LQQQIALQPQLNGYPSQINFSFPQTAAVTLPQQIQHPTQLSQQPQQPDPPP 175
Query: 184 T 186
T
Sbjct: 176 T 176
>SB_28356| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 1737
Score = 27.1 bits (57), Expect = 9.4
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Frame = +2
Query: 161 YRHLDLSQLRLLPINIMYNYPGVESRNLAACPCRLS---LIFHRIQSMQGLHRHPCPCRP 331
YRH ++ LL Y +P + L PC L R + L P P
Sbjct: 1579 YRHPAITDTLLLQTPCYYRHPAITDTPLLQTPCYTDIPLLQTSRFTDIPLLQTSPYYRYP 1638
Query: 332 YLRTRTVLCPPIYRPRCRLSRTPPLHLSPY 421
+ +L P Y ++ T L SPY
Sbjct: 1639 TITDTLLLQTPSYYRHPAITDTLLLQTSPY 1668
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 297 RVCTGTRAHAA-RTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRS 443
R GT + ++ ++ P RSS ST RPS++++ S++ TRS
Sbjct: 19 RAKKGTSSTSSPKSSRPGRSSLASSTDSITQTSNARPSSASKPSNSRTRS 68
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,775,408
Number of Sequences: 59808
Number of extensions: 305908
Number of successful extensions: 1565
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1535
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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