Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1166 - 30876802-30876899,30877233-30878685                       31   0.56 
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52...    30   1.3  
03_03_0278 - 16126803-16129049                                         29   2.3  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    28   4.0  
02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,188...    28   4.0  
03_05_1060 - 30023407-30023553,30024274-30024390,30024958-300251...    27   6.9  

>03_05_1166 - 30876802-30876899,30877233-30878685
          Length = 516

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 258 WLRAPPEELSPPRALPAPVPQSRASVF*GPS 166
           +L  PP+  SPP  LP P P  R  ++  PS
Sbjct: 210 YLWTPPKSSSPPTLLPPPPPPPREKMYPNPS 240


>02_01_0075 -
           522554-522616,522742-522748,523033-523136,523237-523368,
           525209-525401,525978-526330,526693-526791,526864-526935,
           527062-527213,527338-527386,527755-527885,528067-528307,
           528392-528565,528656-528797,529236-529282,529370-529450,
           530170-530271,530345-530440,531437-531444,531575-531616,
           531830-531894,534761-534853,534888-534959,535303-535509,
           536318-537226,537503-538158
          Length = 1429

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -3

Query: 270 GSAGWLRAPPEELSPPRALPAPVPQSRASVF*GPS 166
           G A    +PP    PPR L +P+P+SRA     PS
Sbjct: 3   GLAAADNSPPVAAPPPRRLSSPLPRSRAPPSPSPS 37


>03_03_0278 - 16126803-16129049
          Length = 748

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +1

Query: 43  EDDDGMIPYAAFLKKVMA*KTSQLVISLV 129
           +D+DGM  Y AF++KV++ +  QL IS +
Sbjct: 535 DDEDGMPRYYAFIQKVLSLEPFQLKISFL 563


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 246  PPEELSPPRALPAPVPQSRASV-F*GPSHRTFVAGKLRSYN 127
            PP  + PP   P PVP S +S+ +  P+   F A  ++ Y+
Sbjct: 1199 PPLPIQPPPIPPPPVPSSPSSLGYQPPAPEYFRASNIQKYS 1239


>02_01_0282 + 1882844-1883413,1883519-1883644,1883733-1883930,
            1884442-1884666,1884844-1885224,1885282-1885989,
            1886546-1886839,1887211-1887709,1887949-1888721
          Length = 1257

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +1

Query: 1    DSEVAEVTKDCMDPEDDDGMIPYAAF 78
            D + AEVTKD  D +D DGM   A F
Sbjct: 931  DGDGAEVTKDGDDSDDSDGMDDDAMF 956


>03_05_1060 -
           30023407-30023553,30024274-30024390,30024958-30025129,
           30026116-30026198,30026299-30026917,30027157-30027280,
           30027637-30027745,30028214-30028399,30028716-30028763,
           30028808-30028979,30029034-30029209
          Length = 650

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 273 AGSAGWLRAPPEELSPPRALPAPVPQSRA 187
           AG AG L     E +P  ALP P P + A
Sbjct: 418 AGDAGVLHGKAHEGAPSMALPPPAPSAAA 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,344,624
Number of Sequences: 37544
Number of extensions: 212250
Number of successful extensions: 820
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)