Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.    30   4.3  
BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,...    30   4.3  
BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,...    30   4.3  
BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,...    30   4.3  
AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor...    30   4.3  
AF247662-1|AAF72519.1|  228|Homo sapiens SR-related protein LD2 ...    30   4.3  
AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.           30   4.3  
Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific ...    30   5.7  
BC063835-1|AAH63835.1|  615|Homo sapiens VGF nerve growth factor...    29   9.9  
AC004876-3|AAD45830.1|  615|Homo sapiens WUGSC:H_DJ0747G18.3 pro...    29   9.9  

>L37368-1|AAA92859.1|  305|Homo sapiens RNA-binding protein protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266


>BC108316-1|AAI08317.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266


>BC001838-1|AAH01838.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266


>BC001659-1|AAH01659.1|  305|Homo sapiens RNA binding protein S1,
           serine-rich domain protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266


>AF274003-1|AAL56665.1|  282|Homo sapiens splicing-related factor
           RNPS1 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 217 APWPRPPPRRFSPPRRMLPPPPMWRRS 243


>AF247662-1|AAF72519.1|  228|Homo sapiens SR-related protein LD2
           protein.
          Length = 228

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 163 APWPRPPPRRFSPPRRMLPPPPMWRRS 189


>AF015608-1|AAC39791.1|  305|Homo sapiens SR protein protein.
          Length = 305

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 264 AGWLRAPPEELSPPRALPAPVPQSRAS 184
           A W R PP   SPPR +  P P  R S
Sbjct: 240 APWPRPPPRRFSPPRRMLPPPPMWRRS 266


>Y12661-1|CAA73210.1|  616|Homo sapiens neuro-endocrine specific
           protein VGF protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 5.7
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 252 RAPPEELSPPRALPAP 205
           +APPE + PPRA PAP
Sbjct: 486 KAPPEPVPPPRAAPAP 501


>BC063835-1|AAH63835.1|  615|Homo sapiens VGF nerve growth factor
           inducible protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 249 APPEELSPPRALPAP 205
           APPE + PPRA PAP
Sbjct: 486 APPEPVPPPRAAPAP 500


>AC004876-3|AAD45830.1|  615|Homo sapiens WUGSC:H_DJ0747G18.3
           protein.
          Length = 615

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 249 APPEELSPPRALPAP 205
           APPE + PPRA PAP
Sbjct: 486 APPEPVPPPRAAPAP 500


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,027,588
Number of Sequences: 237096
Number of extensions: 1129204
Number of successful extensions: 3753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3752
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)