Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   6.2  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   6.2  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    27   6.2  
U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light c...    27   8.1  
L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin l...    27   8.1  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    27   8.1  

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 63  PLRSIPEEGHGVEDITTRHIFSYKIVTFLRRMCDGWDPKRPKPGT 197
           P R +P    G  + TT +  S +  T  R    G+ P+RP+PGT
Sbjct: 313 PSRPVPPTSDGHIEATTPYNPSAQYPTGKRGSHPGFGPQRPRPGT 357


>AL032644-7|CAA21670.1|  354|Caenorhabditis elegans Hypothetical
           protein Y51H1A.7 protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 255 LRAPPEELSPPRALPAPVPQSRASV 181
           LRAP EE  PP A  APVP    ++
Sbjct: 211 LRAPLEEEKPPVATMAPVPDEHKAI 235


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 463 IGRIGYRAPPRVFFFFF 413
           IG  G+ APP VF FFF
Sbjct: 348 IGAFGHEAPPLVFKFFF 364


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 463 IGRIGYRAPPRVFFFFF 413
           IG  G+ APP VF FFF
Sbjct: 346 IGAFGHEAPPLVFKFFF 362


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 253 QPARAPSHVDIPYNILDTDKPLFLYEQHNIN 345
           + A  PS++ +  N LD+D+ +  YE H+ +
Sbjct: 37  EKANCPSNISLYVNHLDSDRSVIPYEYHSFD 67


>U00050-10|AAA50701.1|  153|Caenorhabditis elegans Myosin light
           chain protein 3, isoforma protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 43  EDDDGMIPYAAFLKKVMA 96
           ED +GM+ Y  F+KKV+A
Sbjct: 129 EDGEGMVKYEDFIKKVLA 146


>L03412-1|AAA28112.1|  153|Caenorhabditis elegans alkali myosin
           light chain protein.
          Length = 153

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 43  EDDDGMIPYAAFLKKVMA 96
           ED +GM+ Y  F+KKV+A
Sbjct: 129 EDGEGMVKYEDFIKKVLA 146


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 270 GSAGWLRAPPEELSPPRALPAPVPQSRAS 184
           GS G ++  P++  P ++ P P PQ + S
Sbjct: 473 GSYGGMQQQPQQQQPMQSAPPPAPQRQTS 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,077
Number of Sequences: 27780
Number of extensions: 172532
Number of successful extensions: 560
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)