Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39440.1 68417.m05581 expressed protein  ; expression support...    28   4.4  
At5g07080.1 68418.m00802 transferase family protein similar to 1...    27   5.8  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    27   5.8  

>At4g39440.1 68417.m05581 expressed protein  ; expression supported
           by MPSS
          Length = 443

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 377 VQSKVESCTKQLILCCSYKKRGLSVSKM 294
           V  K E+CT  L LC S KK G +V  +
Sbjct: 153 VSFKEETCTPSLDLCLSIKKGGANVDTL 180


>At5g07080.1 68418.m00802 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
           cuspidata, AF193765, EMBL:AF193765; contains Pfam
           transferase family domain PF00248
          Length = 450

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 88  PSSGMLRRGSCRHRLQGPCSP 26
           P +G L RGS  HRL+  CSP
Sbjct: 83  PLAGKLHRGSHDHRLELRCSP 103


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 246 PPEELSPPRALPAPVPQS 193
           PP E  PP +LP P P+S
Sbjct: 147 PPPESPPPESLPPPSPES 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,564,575
Number of Sequences: 28952
Number of extensions: 159912
Number of successful extensions: 478
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)