Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    26   3.9  
SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.9  
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    25   5.2  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   6.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    25   9.0  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   9.0  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    25   9.0  

>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 76  IYSLYSHSVSQSALQSNKSKYSPAAADD 159
           +YS YSH +  S +++ K+  +P   DD
Sbjct: 239 LYSSYSHDLIPSQIEAGKNGANPDVFDD 266


>SPBC14C8.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 163 LCHQRQQENIYFYLT 119
           +CH R +ENIY Y T
Sbjct: 18  VCHVRNRENIYLYWT 32


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 182 KDVDDSPLSSAAAGEYLLLFDCKA 111
           KD+ D PLSS + G    +  C+A
Sbjct: 396 KDIKDKPLSSISVGMQRFILFCRA 419


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 73  MIYSLYSHSVSQSALQSNKSKYSPAAADDKG 165
           ++Y LYS S+S SA+ + + +   A    +G
Sbjct: 12  LVYDLYSGSLSPSAIAATEKELQKAQRSQQG 42


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 372 NPHTSNCANQSVIDSNLISNLFRK 301
           NP  SNC+ +S+ D N+   L  K
Sbjct: 914 NPVESNCSEESLDDHNIDQTLVNK 937


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 326 LESITDWFAQLEVCGLEEALPVANIRQNGSLL 421
           L ++ DW     V     +LP+ N+R +GS L
Sbjct: 411 LRNLADWNNLSLVSSKFPSLPITNLRPDGSFL 442


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 YSPAAADDKGLSSTSLNISFTRN 204
           YSP AAD   L    LN+ F RN
Sbjct: 194 YSPRAADIWALGICLLNLIFARN 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,832
Number of Sequences: 5004
Number of extensions: 38708
Number of successful extensions: 95
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)