Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367...    28   5.2  
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934...    27   9.1  

>07_01_0488 -
           3678329-3678577,3678769-3678810,3678891-3678944,
           3679149-3679212,3679316-3679410,3679477-3679584,
           3679679-3679752,3680338-3680410,3680539-3680586,
           3680694-3680877,3681262-3681440,3682167-3682259,
           3682738-3682851,3683570-3683644,3683852-3684112,
           3684821-3684934,3685473-3685529,3686668-3686863,
           3686922-3686986,3687112-3687195,3688155-3688223,
           3688545-3688844
          Length = 865

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = -1

Query: 272 FLC---SNIYDWKTIY*T*VTLVFYQFLVNEIFKDVDDSPLSSAAAG--EYLLLFDCKAD 108
           FLC   S + + +TI    V ++  QF+VN   + +DDS L    AG    +L+ +   D
Sbjct: 183 FLCRALSEVPNKQTIAGVRVGMINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCD 242

Query: 107 *LTE 96
            LTE
Sbjct: 243 FLTE 246


>02_05_0685 +
           30891289-30891810,30892740-30892915,30893379-30893492,
           30893846-30893954,30894038-30894124,30895137-30895736,
           30895823-30896101,30896808-30896897,30897151-30897507,
           30897924-30898160,30898733-30898953,30899856-30899955,
           30900042-30900188,30900287-30900385
          Length = 1045

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 305 LNKLEIKLESITDWFAQLEVCGLEEALPVANIRQNGSLLDLKFRV*Y 445
           + +LE +   +T    Q+E  G +E L ++ + Q    LD+  +V Y
Sbjct: 830 IERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIY 876


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,198,958
Number of Sequences: 37544
Number of extensions: 214287
Number of successful extensions: 383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)