Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307C01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   2.3  
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   27   7.1  
SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)                27   9.4  

>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 73  MIYSLYSHSVSQSALQSNKSKYSPAAADDKGLSSTSLNISF 195
           +IY+ +S +++ S L     K+SP+  D    +S   N SF
Sbjct: 734 LIYASFSTAMTASKLSKRNGKWSPSQHDKLSATSDEYNYSF 774


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 432 NLRSSRL--PFCLILATGRASSNPHTSNCANQSVIDSNLISNLFRK 301
           N RSS++  P C ++     S N H   CA ++ I +N +  +  +
Sbjct: 366 NTRSSKISCPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_14155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 495

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 432 NLRSSRL--PFCLILATGRASSNPHTSNCANQSVIDSNLISNLFRK 301
           N RSS++  P C ++     S N H   CA ++ I +N +  +  +
Sbjct: 366 NTRSSKISCPICGLVFKTTKSRNSHVKKCAQKNNIPANQVIEIMHR 411


>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
          Length = 1663

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 206 QFLVNEIFKDVDDSPLSSAAAGEYLLLFDCKAD 108
           +++V E F+  D + LS    GEY+ L  CK D
Sbjct: 716 RYMVTEDFRGKDKNQLS-VRKGEYVYLVSCKKD 747


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,855
Number of Sequences: 59808
Number of extensions: 274030
Number of successful extensions: 452
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)