Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307B12f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q875T2 Cluster: BUL2; n=1; Saccharomyces castellii|Rep:...    34   1.7  
UniRef50_Q9PPZ9 Cluster: GTP-binding protein era homolog; n=2; U...    32   9.2  

>UniRef50_Q875T2 Cluster: BUL2; n=1; Saccharomyces castellii|Rep: BUL2
            - Saccharomyces castellii (Yeast)
          Length = 902

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 243  INTSIEY*VLKYLI*SVKSCLCKRFWNVVIPLSIHNS*RKTVNAFLFI*NFV 88
            +N      +++ L+ S +SCLC RF++V + +  H+    T++  + + NFV
Sbjct: 850  VNLEFNRNLIQTLVPSFESCLCSRFYSVRVNIKFHHLGTLTIDVPISVKNFV 901


>UniRef50_Q9PPZ9 Cluster: GTP-binding protein era homolog; n=2;
           Ureaplasma parvum|Rep: GTP-binding protein era homolog -
           Ureaplasma parvum (Ureaplasma urealyticum biotype 1)
          Length = 300

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 128 LYELCIDRGITTFQNRLHRQLFTDYIKYFRT*YSILVLIQYLKTQCTEN 274
           L+ + ID+ I T +N LH+ + TDY +         V+ + ++ QC  N
Sbjct: 155 LHVINIDKLINTIKNYLHKDVVTDYFRQKAEKEDKFVITEIIREQCLLN 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,603,567
Number of Sequences: 1657284
Number of extensions: 6594278
Number of successful extensions: 12705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12704
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)